Refactor UML module selection UI and enhance schema mappings across various YAML files

frontend/public/schemas/20251121/linkml/archive/refactored/StaffRoles_monolithic_20260108.yaml

@@ -16,7 +16,7 @@ imports:
 classes:
   Curator:
     is_a: StaffRole
-    class_uri: schema:curator
+    class_uri: hc:Curator
     description: |
       Curator responsible for collections research, acquisition, and exhibitions.
 
@@ -41,7 +41,6 @@ classes:
       - Object interpretation and labeling
       - Loan negotiations
     exact_mappings:
-  - schema:curator
     - wikidata:Q674426
     slot_usage:
       role_category:

frontend/public/schemas/20251121/linkml/modules/classes/Acquisition.yaml

@@ -91,7 +91,7 @@ classes:
     - crm:E8_Acquisition
     close_mappings:
     - prov:Activity
-    - schema:AcquireAction
+    - schema:TradeAction
     related_mappings:
     - rico:Event
     - dwc:Event

frontend/public/schemas/20251121/linkml/modules/classes/Agreement.yaml

@@ -17,7 +17,9 @@ imports:
   - ../slots/temporal_extent
 classes:
   Agreement:
-    class_uri: schema:Contract
+    class_uri: hc:Agreement
+    close_mappings:
+    - schema:Thing
     description: >-
       Formal arrangement between two or more parties establishing mutual
       obligations, rights, or expectations, typically documented in writing

frontend/public/schemas/20251121/linkml/modules/classes/Animal.yaml

@@ -17,7 +17,9 @@ imports:
 - ../slots/categorized_as
 classes:
   Animal:
-    class_uri: schema:Animal
+    class_uri: wd:Q729
+    exact_mappings:
+    - wikidata:Q729
     description: >-
       Multicellular living organism characterized by heterotrophic nutrition,
       motility at some life stage, and sensory response capacity.
@@ -83,10 +85,7 @@ classes:
     - zoological
     - wildlife
     - fauna
-    exact_mappings:
-    - schema:Animal
     broad_mappings:
-    - wd:Q729
     - schema:Thing
     slots:
     - has_label
@@ -103,7 +102,7 @@ classes:
       Preserved from prior description:
 
       **Ontological Alignment**:
-      - `schema:Animal`: Generic animal class.
+      - `wikidata:Q729`: Animal (kingdom Animalia) - Wikidata entity for animals.
     - 'Preserved from prior description: Living organism belonging to the kingdom Animalia, characterized by voluntary movement, consumption of organic material, and typically sensory and nervous systems, relevant to natural history collections and zoological specimens.'
     annotations:
       specificity_score: "0.2"

frontend/public/schemas/20251121/linkml/modules/classes/AuctionHouse.yaml

@@ -42,7 +42,7 @@ classes:
       description: Specialized auction house
     close_mappings:
     - schema:Organization
-    - schema:AuctionHouse
+    - schema:LocalBusiness
     broad_mappings:
     - skos:Concept
     structured_aliases:

frontend/public/schemas/20251121/linkml/modules/classes/AvailabilityStatus.yaml

@@ -15,7 +15,9 @@ prefixes:
 default_prefix: hc
 classes:
   AvailabilityStatus:
-    class_uri: schema:Availability
+    class_uri: hc:AvailabilityStatus
+    broad_mappings:
+    - schema:ItemAvailability
     description: >-
       Availability state of a resource, service, or feature, indicating whether
       something is currently available for use with optional temporal validity

frontend/public/schemas/20251121/linkml/modules/classes/Classroom.yaml

@@ -5,6 +5,7 @@ prefixes:
   linkml: https://w3id.org/linkml/
   hc: https://nde.nl/ontology/hc/
   schema: http://schema.org/
+  rec: https://w3id.org/rec#
   qudt: http://qudt.org/schema/qudt/
 default_prefix: hc
 imports:
@@ -15,7 +16,7 @@ imports:
 classes:
   Classroom:
     is_a: Facility
-    class_uri: schema:Classroom
+    class_uri: rec:Classroom
     description: >-
       Instructional room entity for teaching, workshops, and guided learning sessions within institutional premises.
     alt_descriptions:
@@ -42,7 +43,7 @@ classes:
         examples:
         - value: 'unit_type: CLASSROOM '
     exact_mappings:
-    - schema:Classroom
+    - rec:Classroom
     close_mappings:
     - schema:Room
     - schema:Place

frontend/public/schemas/20251121/linkml/modules/classes/ComplianceStatus.yaml

@@ -54,8 +54,6 @@ classes:
         required: false
     close_mappings:
     - dcterms:conformsTo
-    related_mappings:
-    - schema:assessment
     annotations:
       custodian_types: '["A", "L", "M"]'
       custodian_types_rationale: Compliance tracking is common for archives, libraries, and museums with preservation mandates.

frontend/public/schemas/20251121/linkml/modules/classes/Currency.yaml

@@ -17,7 +17,9 @@ imports:
   - ../slots/has_score
 classes:
   Currency:
-    class_uri: schema:Currency
+    class_uri: qudt:CurrencyUnit
+    exact_mappings:
+    - qudt:CurrencyUnit
     description: >-
       Standardized monetary unit with ISO 4217 code representation for pricing, budgeting, and financial valuation metadata.
     alt_descriptions:

frontend/public/schemas/20251121/linkml/modules/classes/DeceasedStatus.yaml

@@ -17,7 +17,9 @@ imports:
 - ../slots/temporal_extent
 classes:
   DeceasedStatus:
-    class_uri: schema:DeathEvent
+    class_uri: hc:DeceasedStatus
+    broad_mappings:
+    - schema:Event
     description: >-
       Structured event record for a person's death including causal,
       temporal, and contextual attributes.
@@ -38,9 +40,8 @@ classes:
     - {literal_form: status kematian, in_language: id}
     - {literal_form: 死亡状态记录, in_language: zh}
     exact_mappings:
-    - schema:DeathEvent
-    close_mappings:
     - crm:E69_Death
+    close_mappings:
     related_mappings:
     - prov:End
     keywords:

frontend/public/schemas/20251121/linkml/modules/classes/ForkliftAccess.yaml

@@ -12,7 +12,7 @@ imports:
 - ../slots/has_description
 classes:
   ForkliftAccess:
-    class_uri: schema:AmenityFeature
+    class_uri: schema:LocationFeatureSpecification
     description: >-
       Facility access feature indicating whether spaces permit forklift entry
       for logistics, handling, or collection movement.

frontend/public/schemas/20251121/linkml/modules/classes/HandsOnFacility.yaml

@@ -12,7 +12,7 @@ imports:
 - ../slots/has_description
 classes:
   HandsOnFacility:
-    class_uri: schema:AmenityFeature
+    class_uri: schema:LocationFeatureSpecification
     description: >-
       Amenity feature indicating availability of interactive, practical learning
       or handling spaces for visitors and participants.

frontend/public/schemas/20251121/linkml/modules/classes/InstitutionalRepository.yaml

@@ -15,7 +15,9 @@ imports:
 classes:
   InstitutionalRepository:
     is_a: ArchiveOrganizationType
-    class_uri: schema:DigitalLibrary
+    class_uri: hc:InstitutionalRepository
+    broad_mappings:
+    - schema:Library
     description: >-
       Digital repository service for preserving, publishing, and providing access
       to scholarly output produced by an academic or research institution.
@@ -62,8 +64,6 @@ classes:
     - literal_form: 机构仓储
       predicate: EXACT_SYNONYM
       in_language: zh
-    broad_mappings:
-    - schema:DigitalLibrary
     close_mappings:
     - skos:Concept
     slots:

frontend/public/schemas/20251121/linkml/modules/classes/LoadingDock.yaml

@@ -11,7 +11,7 @@ imports:
 - ../slots/has_description
 classes:
   LoadingDock:
-    class_uri: schema:AmenityFeature
+    class_uri: schema:LocationFeatureSpecification
     description: >-
       Designated area for receiving and dispatching physical items through vehicular transport.
     alt_descriptions:

frontend/public/schemas/20251121/linkml/modules/classes/Locker.yaml

@@ -11,7 +11,7 @@ imports:
 - ../slots/has_description
 classes:
   Locker:
-    class_uri: schema:AmenityFeature
+    class_uri: schema:LocationFeatureSpecification
     description: >-
       Secure storage compartment provided as a visitor or staff amenity for temporary personal item retention.
     alt_descriptions:
@@ -52,7 +52,7 @@ classes:
       predicate: EXACT_SYNONYM
       in_language: zh
     broad_mappings:
-    - schema:AmenityFeature
+    - schema:LocationFeatureSpecification
     slots:
     - has_description
     comments:

frontend/public/schemas/20251121/linkml/modules/classes/ProductCategory.yaml

@@ -42,7 +42,7 @@ classes:
       zh: >-
         分类概念，根据分类系统中的共同特征、功能、材料或预期用途对产品或项目进行分组。
     exact_mappings:
-      - schema:Category
+      - schema:CategoryCode
     broad_mappings:
       - skos:Concept
       - schema:Thing

frontend/public/schemas/20251121/linkml/modules/classes/SupervisedHandling.yaml

@@ -13,7 +13,9 @@ imports:
 - ../slots/has_description
 classes:
   SupervisedHandling:
-    class_uri: schema:Policy
+    class_uri: hc:SupervisedHandling
+    close_mappings:
+    - schema:Thing
     description: >-
       Policy mandating that access to or manipulation of materials occurs only under staff observation and guidance to ensure proper care.
     alt_descriptions:

frontend/public/schemas/20251121/linkml/modules/classes/WikidataRecognition.yaml

@@ -44,7 +44,6 @@ classes:
     broad_mappings:
       - prov:Entity
     related_mappings:
-      - schema:Award
       - crm:E7_Activity
       - schema:Organization
     slots: []

frontend/public/schemas/20251121/linkml/modules/classes/YoutubeTranscript.yaml

@@ -24,13 +24,12 @@ classes:
       ar: نسخ فيديو YouTube بما في ذلك معرف الفيديو واللغة ونوع النسخ (يدوي أو مولد تلقائيًا) والنص الكامل وبيانات الاستخراج الوصفية للوصول وتحليل المحتوى.
       id: Transkrip video YouTube termasuk ID video, bahasa, jenis transkrip (manual atau dihasilkan otomatis), teks lengkap, dan metadata ekstraksi untuk aksesibilitas dan analisis konten.
       zh: YouTube视频字幕，包括视频ID、语言、字幕类型（手动或自动生成）、 全文和提取元数据，用于无障碍访问和内容分析。
-    class_uri: schema:Transcript
+    class_uri: hc:YoutubeTranscript
     close_mappings:
-    - schema:Transcript
+    - schema:MediaObject
     related_mappings:
     - oa:TextualBody
     - prov:Entity
-    - schema:MediaObject
     slots:
     - in_language
     structured_aliases:

frontend/public/schemas/20251121/linkml/modules/enums/DonationSchemeTypeEnum.yaml

@@ -573,7 +573,6 @@ enums:
       SPONSORSHIP_EXHIBITION:
         description: |
           Corporate or individual sponsorship of temporary exhibition.
-        meaning: schema:SponsorAction
         annotations:
           category: sponsorship
           typical_benefits: |
@@ -586,7 +585,6 @@ enums:
       SPONSORSHIP_GALLERY:
         description: |
           Named sponsorship of permanent gallery or wing.
-        meaning: schema:SponsorAction
         annotations:
           category: sponsorship
           custodian_types: "G, M, B, H"
@@ -595,7 +593,6 @@ enums:
         description: |
           Sponsorship of institutional event (gala, lecture series,
           education program).
-        meaning: schema:SponsorAction
         annotations:
           category: sponsorship
           custodian_types: "G, L, A, M, O, R, B, E, S, H, D"
@@ -604,7 +601,6 @@ enums:
         description: |
           Sponsorship of ongoing program (education, outreach,
           conservation, research).
-        meaning: schema:SponsorAction
         annotations:
           category: sponsorship
           examples: |
@@ -615,7 +611,6 @@ enums:
       SPONSORSHIP_DIGITIZATION:
         description: |
           Sponsorship of digitization projects for online access.
-        meaning: schema:SponsorAction
         annotations:
           category: sponsorship
           examples: |
@@ -626,7 +621,6 @@ enums:
       SPONSORSHIP_CONSERVATION:
         description: |
           Sponsorship of conservation or restoration work.
-        meaning: schema:SponsorAction
         annotations:
           category: sponsorship
           examples: |

frontend/public/schemas/20251121/linkml/modules/enums/LanguageProficiencyEnum.yaml

@@ -17,18 +17,13 @@ enums:
     permissible_values:
       NATIVE_BILINGUAL:
         description: Native or bilingual proficiency
-        meaning: schema:Expert
       FULL_PROFESSIONAL:
         description: Full professional proficiency
-        meaning: schema:Advanced
       PROFESSIONAL_WORKING:
         description: Professional working proficiency
-        meaning: schema:Intermediate
       LIMITED_WORKING:
         description: Limited working proficiency
-        meaning: schema:Intermediate
       ELEMENTARY:
         description: Elementary proficiency
-        meaning: schema:Beginner
       UNKNOWN:
         description: Proficiency level not specified

frontend/public/schemas/20251121/linkml/modules/enums/LoanStatusEnum.yaml

@@ -57,7 +57,6 @@ enums:
         description: |
           Initial loan request submitted by borrowing institution.
           Loan is awaiting review by lending institution.
-        meaning: schema:PendingAction
         annotations:
           loan_phase: "initiation"
           next_states: '["UNDER_REVIEW", "DECLINED", "CANCELLED"]'
@@ -110,7 +109,6 @@ enums:
         description: |
           Object in transit from lender to borrower.
           May involve courier accompaniment for high-value items.
-        meaning: schema:InTransitAction
         annotations:
           loan_phase: "transit"
           next_states: '["ON_LOAN", "RETURNED"]'
@@ -144,7 +142,6 @@ enums:
         description: |
           Object in transit from borrower back to lender.
           Return journey underway.
-        meaning: schema:InTransitAction
         annotations:
           loan_phase: "transit"
           next_states: '["RETURNED"]'

frontend/public/schemas/20251121/linkml/modules/enums/QuantityTypeEnum.yaml

@@ -23,7 +23,6 @@ enums:
         meaning: schema:size
       VISITOR_COUNT:
         description: Number of visitors (annual, daily, etc.).
-        meaning: schema:numberOfAttendees
       BUDGET_AMOUNT:
         description: Financial amount (budget, revenue, cost).
         meaning: schema:amount
@@ -53,7 +52,6 @@ enums:
         meaning: schema:numberOfItems
       CHARACTER_COUNT:
         description: Number of characters in text content.
-        meaning: schema:characterCount
       WORD_COUNT:
         description: Number of words in text content.
         meaning: schema:wordCount

frontend/public/schemas/20251121/linkml/modules/enums/RoomUnitTypeEnum.yaml

@@ -18,6 +18,7 @@ prefixes:
   linkml: https://w3id.org/linkml/
   hc: https://nde.nl/ontology/hc/
   schema: http://schema.org/
+  rec: https://w3id.org/rec#
 
 imports:
   - linkml:types
@@ -34,7 +35,7 @@ enums:
       # Educational spaces
       CLASSROOM:
         description: Teaching/learning space for group instruction
-        meaning: schema:Classroom
+        meaning: rec:Classroom
         annotations:
           usage_context: education
           typical_capacity: "20-40"

frontend/public/schemas/20251121/linkml/modules/slots/has_accessibility_feature.yaml

@@ -142,17 +142,17 @@ slots:
       - has_or_had_accessibility_feature
       - is_accessible
     examples:
-      - value: "schema:wheelchairAccessible"
+      - value: "wheelchairAccessible"
         description: Physical location is accessible by wheelchair
-      - value: "schema:audioDescription"
+      - value: "audioDescription"
         description: Content includes audio description for visually impaired users
-      - value: "schema:captions"
+      - value: "captions"
         description: Content includes captions for deaf or hard-of-hearing users
-      - value: "schema:signLanguage"
+      - value: "signLanguage"
         description: Content includes sign language interpretation
-      - value: "schema:braille"
+      - value: "braille"
         description: Materials available in Braille format
-      - value: "schema:largePrint"
+      - value: "largePrint"
         description: Materials available in large print format
     comments:
       - Updated 2026-02-03 with verified ontology mappings and translations

frontend/src/pages/Visualize.css

@@ -1126,6 +1126,46 @@
   margin-top: 0.75rem;
 }
 
+.uml-module-chips {
+  margin-top: 0.75rem;
+}
+
+.uml-module-chips-title {
+  margin: 0 0 0.375rem 0;
+  font-size: 0.75rem;
+  color: #172a59;
+  font-weight: 500;
+}
+
+.uml-module-chip-row {
+  display: flex;
+  flex-wrap: wrap;
+  gap: 0.375rem;
+}
+
+.uml-module-chip {
+  padding: 0.35rem 0.625rem;
+  border: 1px solid #c8d4ff;
+  background: white;
+  color: #2c5ce6;
+  border-radius: 999px;
+  font-size: 0.75rem;
+  font-weight: 500;
+  cursor: pointer;
+  transition: all 0.15s ease;
+}
+
+.uml-module-chip:hover {
+  border-color: #4a7dff;
+  background: #f8f9ff;
+}
+
+.uml-module-chip.active {
+  border-color: #4a7dff;
+  background: #4a7dff;
+  color: white;
+}
+
 .uml-module-label {
   display: block;
   margin: 0 0 0.375rem 0;
@@ -2499,6 +2539,27 @@ body:has(.visualize-page.is-mobile .sidebar--mobile:not(.collapsed)) {
   color: #e0e0e0;
 }
 
+[data-theme="dark"] .uml-module-chips-title {
+  color: #e0e0e0;
+}
+
+[data-theme="dark"] .uml-module-chip {
+  background: #1e1e32;
+  border-color: #3d3d5c;
+  color: #a7c1ff;
+}
+
+[data-theme="dark"] .uml-module-chip:hover {
+  border-color: #4a7dff;
+  background: #2d2d4a;
+}
+
+[data-theme="dark"] .uml-module-chip.active {
+  border-color: #4a7dff;
+  background: #4a7dff;
+  color: white;
+}
+
 [data-theme="dark"] .uml-module-select {
   background: #1e1e32;
   border-color: #3d3d5c;

frontend/src/pages/Visualize.tsx

@@ -62,6 +62,7 @@ function isAdvancedRdfLayout(layout: string): layout is RdfAdvancedLayoutType {
 
 type UmlDensityMode = 'full' | 'streamlined' | 'module';
 type UmlModuleOption = { id: string; label: string; count: number };
+const POPULAR_UML_MODULE_IDS = ['custodian', 'legal', 'collections'];
 
 function humanizeModuleName(moduleId: string): string {
   return moduleId
@@ -193,6 +194,7 @@ const TEXT = {
   umlModeModuleHint: { nl: 'Toon een domein met context', en: 'Show one domain with context' },
   umlModuleSelect: { nl: 'Module', en: 'Module' },
   umlModuleAll: { nl: 'Alle modules', en: 'All modules' },
+  umlPopularModules: { nl: 'Populaire modules', en: 'Popular modules' },
   umlShowingClasses: { nl: 'klassen zichtbaar', en: 'classes visible' },
   
   // View switcher
@@ -1196,6 +1198,11 @@ export function Visualize() {
     return options;
   }, [umlDiagram, t]);
 
+  const popularUmlModules = useMemo(() => {
+    if (!umlModuleOptions.length) return [];
+    return umlModuleOptions.filter((option) => POPULAR_UML_MODULE_IDS.includes(option.id));
+  }, [umlModuleOptions]);
+
   useEffect(() => {
     if (!umlModuleOptions.length) return;
     if (umlModuleOptions.some((option) => option.id === selectedUmlModule)) return;
@@ -1539,6 +1546,33 @@ export function Visualize() {
               </button>
             </div>
             {umlDensityMode === 'module' && umlModuleOptions.length > 0 && (
+              <>
+                <div className="uml-module-chips">
+                  <p className="uml-module-chips-title">{t('umlPopularModules')}</p>
+                  <div className="uml-module-chip-row">
+                    <button
+                      className={`uml-module-chip ${selectedUmlModule === '__all__' ? 'active' : ''}`}
+                      onClick={() => {
+                        setSelectedUmlModule('__all__');
+                        localStorage.setItem('visualize-uml-module', '__all__');
+                      }}
+                    >
+                      {t('umlModuleAll')}
+                    </button>
+                    {popularUmlModules.map((option) => (
+                      <button
+                        key={option.id}
+                        className={`uml-module-chip ${selectedUmlModule === option.id ? 'active' : ''}`}
+                        onClick={() => {
+                          setSelectedUmlModule(option.id);
+                          localStorage.setItem('visualize-uml-module', option.id);
+                        }}
+                      >
+                        {option.label}
+                      </button>
+                    ))}
+                  </div>
+                </div>
                 <div className="uml-module-picker">
                   <label htmlFor="uml-module-select" className="uml-module-label">{t('umlModuleSelect')}</label>
                   <select
@@ -1558,6 +1592,7 @@ export function Visualize() {
                     ))}
                   </select>
                 </div>
+              </>
             )}
             {displayUmlDiagram && umlDiagram && (
               <p className="uml-density-info">