- Introduced BirthDate class with support for EDTF notation, provenance tracking, and confidence scoring.
- Added BirthPlace class to preserve historical names, link modern equivalents, and integrate geographic identifiers.
- Created Approximation Level slot to express uncertainty levels for various values.
- Migrated existing slots to structured classes for better data modeling, including has_or_had_date_of_birth and has_or_had_place_of_birth.
- Enhanced service area representation with has_or_had_service_area slot, linking to ServiceArea class.
- Updated is_or_was_approximate slot to model uncertainty levels using ApproximationStatus class.
- Archived previous versions of slots for historical reference.
- Migrated `audio_event_segments` to `has_or_had_segment` with range `AudioEventSegment` in VideoAudioAnnotation.yaml.
- Removed deprecated slots: `approved_by`, `audio_event_segments`, `bay_number`, `box_number`, and `budget_status`.
- Created new classes: `AudioEventSegment`, `BayNumber`, `BoxNumber`, and `BudgetStatus` to encapsulate previously slot-based data.
- Introduced `has_or_had_auxiliary_entities` slot to replace `auxiliary_places` and `auxiliary_platforms`.
- Archived removed slots to maintain historical context.
- Updated LinkMLViewerPage to utilize new schema element popup for better navigation.
- Implemented a draggable, resizable, and minimizable popup component for displaying previews of LinkML schema elements (classes, slots, enums).
- Integrated loading states and error handling for fetching element information.
- Added navigation functionality to go to full element view.
- Enhanced user experience with type badges and detailed descriptions for each element type.
chore: Migrate AudioEventSegment, BayNumber, BoxNumber, and BudgetStatus classes to new YAML schema format
- Created new YAML definitions for AudioEventSegment, BayNumber, BoxNumber, and BudgetStatus classes with detailed descriptions and attributes.
- Migrated from deprecated slots to new class structures as part of Rule 53.
- Updated imports and prefixes for consistency across schemas.
chore: Archive deprecated slots for audio_event_segments, bay_number, and box_number
- Archived previous slot definitions for audio_event_segments, bay_number, and box_number to maintain historical records.
- Updated slot descriptions and ensured proper URI mappings for future reference.
- Migrated `archived_at` to `is_or_was_archived_at` in AuxiliaryDigitalPlatform, WebObservation, and other relevant classes to better reflect historical archival status.
- Removed `bold_id` slot and replaced it with `has_or_had_identifier` linked to the new `BOLDIdentifier` class in BiologicalObject.
- Introduced `Bookplate` and `Approver` classes to enhance provenance tracking and ownership documentation.
- Updated `InformationCarrier` to replace `bookplate` with `includes_or_included` for better representation of ownership marks.
- Added new slots `is_or_was_approved_by` and `is_or_was_archived_at` to capture historical approval and archival locations.
- Archived old slot definitions for `archived_at` and `bold_id` to maintain schema integrity.
- Enhanced LinkedIn profile extraction functionality by integrating Linkup API alongside Exa API.
- Introduced `is_or_was_created_through` slot to indicate content creation methods, replacing previous boolean flags.
- Added `is_or_was_required` slot for generic temporal boolean requirements, aligning with Schema.org.
- Created `AutoGeneration` class to represent automatic content generation, capturing methods and provenance.
- Established `AvailabilityStatus` class to model resource availability with temporal validity.
- Developed `Documentation` class for structured documentation resources, replacing domain-specific slots.
- Implemented `Taxon` class for biological classification in natural history collections.
- Archived previous slots related to API availability and documentation, ensuring a clean schema.
- Enhanced existing slots with detailed descriptions and examples for clarity and usability.
- Removed deprecated slots: appraisal_notes, branch_id, is_or_was_real.
- Introduced new slots: has_or_had_notes, has_or_had_provenance.
- Created Notes class to encapsulate note-related metadata.
- Archived removed slots and classes in accordance with the new archive folder convention.
- Updated slot_fixes.yaml to reflect migration status and details.
- Enhanced documentation for new slots and classes, ensuring compliance with ontology alignment.
- Added new slots for note content, date, and type to support the Notes class.
- Added Overview class to represent structured collections of web links, including detailed descriptions, examples, and ontology alignments.
- Introduced RealnessStatus class to classify data as real or synthetic, with rich provenance and temporal semantics.
- Created WebLink class for representing hyperlinks with associated metadata, enhancing structured link representation.
- Established new slots: has_or_had_comprehensive_overview, is_or_was_real, and includes_or_included to support the new classes and improve data modeling.
- Migrated existing slots to new structures, ensuring compliance with RiC-O naming conventions and enhancing specificity.
- Updated annotations and examples across all new classes and slots for clarity and usability.
- Deleted the program_expense slot from the schema.
- Updated slot_fixes.yaml to reflect the migration of administrative_expenses, marking it as fully migrated and archiving related bespoke slots.
- Created archived YAML files for administrative_expenses, fundraising_expense, has_or_had_administrative_expense, innovation_expense, and program_expense, documenting their structure and descriptions.
- All expense types now utilize the Expenses class with ExpenseTypeEnum classification for better organization and clarity.
- Add first page (<<) and last page (>>) navigation buttons
- Add direct page number input field for jumping to specific pages
- Update CSS styling for new pagination controls including input field
- Use stacked ChevronLeft/ChevronRight icons for first/last (lucide-react compatibility)
- accepts_or_accepted_external_work: Remove verbose examples list
- accepts_or_accepted_payment_method: Condense to single sentence
- accepts_or_accepted_visiting_scholar: Minor rewording for consistency
- Add is_likely_wrong_person and wrong_person_reason fields to MatchCandidate
- Add confidence_original field for tracking pre-adjustment scores
- Add visual indicators: AlertTriangle for wrong person, Star for high confidence
- Add filter checkboxes: 'Show high confidence (>80%)' and 'Hide wrong person'
- Add wrong person alert banner with bilingual labels (NL/EN)
- Add danger stat card showing count of likely wrong person matches
- Style signal badges by type: danger (birth_year_mismatch), success (validated)
- Add extensive CSS for wrong-person/high-confidence alerts and candidate styling
When users click on a different class, enum, or slot in the sidebar,
the ontology term popup now automatically closes. This prevents the
popup from persisting and showing stale information from the
previously viewed schema element.
The slot details section was rendering close_mappings, narrow_mappings,
broad_mappings, and related_mappings twice each. This caused the mappings
to appear duplicated on pages like /linkml?class=AcademicArchive.
Removed 68 lines of duplicate JSX code.
- Fix resolveUri() to handle bare local names like 'E27_Site' used by CIDOC-CRM
(previously only handled URIs starting with '#')
- Add EDM (Europeana Data Model) ontology to frontend
- Copy edm.owl to frontend/public/ontology/
- Register in ONTOLOGY_FILES array
- Add 'edm' prefix to STANDARD_PREFIXES
- Add EDM color to ONTOLOGY_COLORS
- Render HTML content in ontology descriptions safely using DOMPurify
- Sanitize HTML to allow only safe tags (a, br, em, strong, etc.)
- Fix Schema.org relative links to absolute URLs
- Add target='_blank' to external links
- Updated `entity_review.py` to map email semantic fields from JSON.
- Expanded `email_semantics.py` with additional museum mappings.
- Introduced a new rule in `.opencode/rules/no-duplicate-ontology-mappings.md` to prevent duplicate ontology mappings.
- Added a backup JSON file for entity resolution candidates.
- Created `enrich_email_semantics.py` to enrich candidates with email semantic signals.
- Developed `merge_entity_reviews.py` to merge reviewed decisions from a backup into new candidates.
The VCard ontology file (and 3 others) use @base directive with relative URIs
like <#Address>. The Turtle parser was not extracting @base or resolving
relative URIs against it.
Changes:
- Extract @base directive in first pass alongside @prefix
- Add baseUri parameter to expandUri() function
- Handle relative URIs starting with # (resolve against base)
- Handle empty relative URI <> (returns base URI itself)
- Pass baseUri through to processSubject() function
This fixes the 'Term not found' error for vcard:Address and similar terms
that use relative URI notation in their ontology definitions.
Affected ontologies: vcard.rdf, prov.ttl, era_ontology.ttl, ebg-ontology.ttl
- Introduced SoundArchiveRecordSetType, SpecialCollectionRecordSetType, SpecializedArchiveRecordSetType, SpecializedArchivesCzechiaRecordSetType, StateArchivesRecordSetType, StateArchivesSectionRecordSetType, StateDistrictArchiveRecordSetType, StateRegionalArchiveCzechiaRecordSetType, TelevisionArchiveRecordSetType, TradeUnionArchiveRecordSetType, UniversityArchiveRecordSetType, VereinsarchivRecordSetType, VerlagsarchivRecordSetType, VerwaltungsarchivRecordSetType, WebArchiveRecordSetType, and WomensArchivesRecordSetType.
- Each new type includes appropriate metadata, slots, and relationships to existing classes.
- Implemented a script to detect and fix Type class violations in LinkML files.
- Remove inline slot definitions from 144 class files
- Create 7 new centralized slot files in modules/slots/:
- custodian_type_broader.yaml
- custodian_type_narrower.yaml
- custodian_type_related.yaml
- definition.yaml
- finding_aid_access_restriction.yaml
- finding_aid_description.yaml
- finding_aid_temporal_coverage.yaml
- Add centralize_inline_slots.py automation script
- Update manifest with new timestamp
Rule 48: Class files must NOT define inline slots - all slots
must be imported from modules/slots/ directory.
Note: Pre-existing IdentifierFormat duplicate class definition
(in Standard.yaml and IdentifierFormat.yaml) not addressed in
this commit - requires separate schema refactor.
- Add entry count badge next to schema file name showing (xC, yE, zS) counts
- Add tooltip explaining LinkML file names vs class names
- Remove redundant section headers (Classes, Enums, Slots collapsible sections)
- Add URL params for enum (?enum=) and slot (?slot=) deep linking
- Persist category filters, dev tools visibility, and legend visibility to localStorage
- Set 'Main Schema' filter to OFF by default (confusing for users)
- Add Rule 48: Class files must not define inline slots
- Introduced EnvironmentalZoneTypeEnum.yaml to classify climate-controlled storage zones with detailed descriptions and recommended conditions for various materials.
- Created slots for environmental zone type code, description, ID, label, and HC preset URI to facilitate structured data representation.
- Implemented boolean slots for specific environmental requirements including dark storage, dust-free environment, ESD protection, and UV filtering, referencing relevant ISO standards.
- Enhanced documentation for each slot to clarify usage and preservation context.
Infrastructure changes to enable automatic frontend deployment when schemas change:
- Add .forgejo/workflows/deploy-frontend.yml workflow triggered by:
- Changes to frontend/** or schemas/20251121/linkml/**
- Manual workflow dispatch
- Rewrite generate-schema-manifest.cjs to properly scan all schema directories
- Recursively scans classes, enums, slots, modules directories
- Uses singular category names (class, enum, slot) matching TypeScript types
- Includes all 4 main schemas at root level
- Skips archive directories and backup files
- Update schema-loader.ts to match new manifest format
- Add SchemaCategory interface
- Update SchemaManifest to use categories as array
- Add flattenCategories() helper function
- Add getSchemaCategories() and getSchemaCategoriesSync() functions
The workflow builds frontend with updated manifest and deploys to bronhouder.nl
