- Removed obsolete slots: `has_or_had_custodian_observation`, `provider`, and `specificity_annotation`.
- Updated `has_or_had_score` slot to use `SpecificityScore` class and modified its description and examples.
- Added new slots: `end_seconds`, `end_time`, `has_archive_path`, `has_or_had_custodian_name`, `protocol_name`, and `protocol_version`.
- Introduced a script `check_annotation_types.py` to validate the presence and structure of `custodian_types` in YAML files.
- Added a script `update_specificity.py` to automate updates related to `SpecificityAnnotation` to `SpecificityScore`.
- Added `id`, `name`, `title`, and `description` fields to multiple LinkML class YAML files.
- Standardized prefixes across all class definitions.
- Introduced a new script `fix_linkml_metadata.py` to automate the addition of metadata to class files.
- Updated existing class files to ensure compliance with the new metadata structure.
- Updated manifest.json with new generated timestamp.
- Added close mappings to APIRequest and Administration classes.
- Renamed slots in AccessPolicy to has_or_had_embargo_end_date and has_or_had_embargo_reason.
- Changed class_uri for Accumulation to rico:AccumulationRelation and updated description.
- Added exact mappings to Altitude, AppellationType, and ArchitecturalStyle classes.
- Removed deprecated slots from CollectionManagementSystem and updated has_or_had_type.
- Added new slots for has_or_had_embargo_end_date and has_or_had_embargo_reason.
- Updated slot definitions for has_or_had_assessment, has_or_had_sequence_index, and others with new URIs and mappings.
- Removed unused slots end_seconds and end_time.
- Added new slot definitions for has_or_had_exhibition_type, has_or_had_extent_text, and is_or_was_documented_by.
