Commit graph

19 commits

Author SHA1 Message Date
kempersc
820d3969bb Refactor code structure for improved readability and maintainability 2026-02-11 12:11:59 +01:00
kempersc
6435786556 edit slots 2026-02-04 00:24:46 +01:00
kempersc
fc405445c6 Refactor and update schema definitions
- Removed obsolete slots: `has_or_had_custodian_observation`, `provider`, and `specificity_annotation`.
- Updated `has_or_had_score` slot to use `SpecificityScore` class and modified its description and examples.
- Added new slots: `end_seconds`, `end_time`, `has_archive_path`, `has_or_had_custodian_name`, `protocol_name`, and `protocol_version`.
- Introduced a script `check_annotation_types.py` to validate the presence and structure of `custodian_types` in YAML files.
- Added a script `update_specificity.py` to automate updates related to `SpecificityAnnotation` to `SpecificityScore`.
2026-02-01 19:55:38 +01:00
kempersc
0c5211e40a removed convenience slots 2026-01-31 00:15:53 +01:00
kempersc
14375c583e added hidden slots 2026-01-30 23:56:19 +01:00
kempersc
c60b523f29 Implement feature X to enhance user experience and fix bug Y in module Z 2026-01-29 00:12:27 +01:00
kempersc
f800e198ff Refactor code structure for improved readability and maintainability 2026-01-28 01:11:55 +01:00
kempersc
4319f38c05 Add archived slots for audience size, audience type, and capacity metrics
- Created new YAML files for audience size and audience type slots, defining their properties and annotations.
- Added archived capacity slots including cubic meters, linear meters, item count, and descriptions, with appropriate URIs and ranges.
- Introduced a template specificity slot for context-aware RAG filtering.
- Consolidated capacity-related slots into a unified structure, including has_or_had_capacity, capacity_type, and capacity_value, with detailed descriptions and examples.
2026-01-17 18:53:23 +01:00
kempersc
f9f3cc8e74 fix: resolve YAML import indentation and add missing slot descriptions
Schema Improvements:
- Fix YAML import indentation across 800+ class files (sed: '^- ../' → '  - ../')
- Add descriptions to 26 inline slots missing them (lint warnings)
- Fix malformed imports in BirthPlace.yaml and CustodianObservation.yaml

Validation Results:
- linkml-lint: 4 warnings (intentional SCREAMING_CASE tier names)
- gen-owl: SUCCESS (164,069 lines generated)
- gen-json-schema: SUCCESS (9.4MB generated)

Files affected: 1,034 files, +23,908 -15,200 lines
2026-01-16 00:09:28 +01:00
kempersc
c2629f6d29 Fix LinkML schema validation errors (0 errors, 30 warnings)
Schema Migration Fixes:
- Fix YAML import indentation in ~650 slot files (linkml:types and enum imports)
- Rename slot reference: has_or_had_holds_record_set_type → hold_or_held_record_set_type
  (70+ archive class files, main schema, manifest.json)
- Fix ProvenanceBlock.yaml: remove invalid any_of range, use string with multivalued
- Fix has_or_had_provenance.yaml: remove nested template_specificity from annotations

Validation Status:
- 0 errors (was multiple import/reference errors)
- 30 warnings (missing descriptions on inline slots, intentional SCREAMING_CASE names)

Files changed: ~3,850 (slots, classes, main schema, manifest)
2026-01-15 23:21:38 +01:00
kempersc
355d8be51d centralise slots 2026-01-12 14:33:56 +01:00
kempersc
0393b321c9 refactor(schema): unify custodian_type slots into has_or_had_custodian_type (Rule 39, 43)
- Migrate 236+ class files from custodian_types to has_or_had_custodian_type
- Archive deprecated slots: custodian_type, custodian_types, custodian_type_broader/narrower/related
- Update main schema and manifest imports
- Fix Custodian.yaml class to use new slot
- Fix annotation format (list→scalar) in has_or_had_custodian_type.yaml

Rules applied:
- Rule 39: RiC-O naming convention (hasOrHad pattern)
- Rule 43: Slot nouns must be singular (multivalued:true for cardinality)
- Rule 38: Slot centralization with semantic URI
2026-01-09 10:55:21 +01:00
kempersc
dfa667c90f Fix LinkML schema for valid RDF generation with proper slot_uri
Summary:
- Create 46 missing slot definition files with proper slot_uri values
- Add slot imports to main schema (01_custodian_name_modular.yaml)
- Fix YAML examples sections in 116+ class and slot files
- Fix PersonObservation.yaml examples section (nested objects → string literals)

Technical changes:
- All slots now have explicit slot_uri mapping to base ontologies (RiC-O, Schema.org, SKOS)
- Eliminates malformed URIs like 'custodian/:slot_name' in generated RDF
- gen-owl now produces valid Turtle with 153,166 triples

New slot files (46):
- RiC-O slots: rico_note, rico_organizational_principle, rico_has_or_had_holder, etc.
- Scope slots: scope_includes, scope_excludes, archive_scope
- Organization slots: organization_type, governance_authority, area_served
- Platform slots: platform_type_category, portal_type_category
- Social media slots: social_media_platform_category, post_type_*
- Type hierarchy slots: broader_type, narrower_types, custodian_type_broader
- Wikidata slots: wikidata_equivalent, wikidata_mapping

Generated output:
- schemas/20251121/rdf/01_custodian_name_modular_20260107_134534_clean.owl.ttl (6.9MB)
- Validated with rdflib: 153,166 triples, no malformed URIs
2026-01-07 13:48:03 +01:00
kempersc
98c42bf272 Fix LinkML URI conflicts and generate RDF outputs
- Fix scope_note → finding_aid_scope_note in FindingAid.yaml
- Remove duplicate wikidata_entity slot from CustodianType.yaml (import instead)
- Remove duplicate rico_record_set_type from class_metadata_slots.yaml
- Fix range types for equals_string compatibility (uriorcurie → string)
- Move class names from close_mappings to see_also in 10 RecordSetTypes files
- Generate all RDF formats: OWL, N-Triples, RDF/XML, N3, JSON-LD context
- Sync schemas to frontend/public/schemas/

Files: 1,151 changed (includes prior CustodianType migration)
2026-01-07 12:32:59 +01:00
kempersc
b34992b1d3 Migrate all 293 class files to ontology-aligned slots
Extends migration to all class types (museums, libraries, galleries, etc.)

New slots added to class_metadata_slots.yaml:
- RiC-O: rico_record_set_type, rico_organizational_principle,
  rico_has_or_had_holder, rico_note
- Multilingual: label_de, label_es, label_fr, label_nl, label_it, label_pt
- Scope: scope_includes, scope_excludes, custodian_only,
  organizational_level, geographic_restriction
- Notes: privacy_note, preservation_note, legal_note

Migration script now handles 30+ annotation types.
All migrated schemas pass linkml-validate.

Total: 387 class files now use proper slots instead of annotations.
2026-01-06 12:24:54 +01:00
kempersc
aa763dab25 Migrate 94 archive class annotations to ontology-aligned slots
- Add migration script: scripts/migrate_annotations_to_slots.py
- Convert custodian_types, wikidata, skos_broader, specificity_* annotations
- Replace with proper slots mapped to SKOS, PROV-O, RiC-O predicates
- Add ../slots/class_metadata_slots import to all migrated files
- Remove AcademicArchive_refactored.yaml (main file now migrated)
- Sync changes to frontend/public/schemas/

Migration converts:
  - custodian_types → hc:custodianTypes slot
  - wikidata/wikidata_label → wikidata_alignment structured slot
  - skos_broader → skos:broader slot
  - specificity_* → specificity_annotation structured slot
  - dual_class_pattern → dual_class_link structured slot
  - template_specificity → template_specificity slot

All 94 migrated schemas pass linkml-validate.
2026-01-06 11:25:37 +01:00
kempersc
11983014bb Enhance specificity scoring system integration with existing infrastructure
- Updated documentation to clarify integration points with existing components in the RAG pipeline and DSPy framework.
- Added detailed mapping of SPARQL templates to context templates for improved specificity filtering.
- Implemented wrapper patterns around existing classifiers to extend functionality without duplication.
- Introduced new tests for the SpecificityAwareClassifier and SPARQLToContextMapper to ensure proper integration and functionality.
- Enhanced the CustodianRDFConverter to include ISO country and subregion codes from GHCID for better geospatial data handling.
2026-01-05 17:37:49 +01:00
kempersc
41959f0766 correct HCID! 2025-12-10 13:01:13 +01:00
kempersc
131e3ca259 normalise custodian entries 2025-12-09 07:56:35 +01:00