- Removed obsolete slots: `has_or_had_custodian_observation`, `provider`, and `specificity_annotation`.
- Updated `has_or_had_score` slot to use `SpecificityScore` class and modified its description and examples.
- Added new slots: `end_seconds`, `end_time`, `has_archive_path`, `has_or_had_custodian_name`, `protocol_name`, and `protocol_version`.
- Introduced a script `check_annotation_types.py` to validate the presence and structure of `custodian_types` in YAML files.
- Added a script `update_specificity.py` to automate updates related to `SpecificityAnnotation` to `SpecificityScore`.
Apply same RiC-O-style slot naming refactor to /schemas/20251121/linkml/
that was previously applied to frontend/public/schemas/:
- Add 'has_' prefix for possession predicates
- Add 'is_or_was_' prefix for temporal inverse relationships
- Add 'has_or_had_' for bidirectional temporal relations
- Add new slots: is_or_was_aggregated_by, is_or_was_allocated_by, etc.
- Update count slots with proper descriptions
This ensures consistency between the source schema directory and the
frontend-served schemas.
514 files changed, +6,325 insertions, -4,255 deletions
