11983014bb
- Updated documentation to clarify integration points with existing components in the RAG pipeline and DSPy framework. - Added detailed mapping of SPARQL templates to context templates for improved specificity filtering. - Implemented wrapper patterns around existing classifiers to extend functionality without duplication. - Introduced new tests for the SpecificityAwareClassifier and SPARQLToContextMapper to ensure proper integration and functionality. - Enhanced the CustodianRDFConverter to include ISO country and subregion codes from GHCID for better geospatial data handling.
856 lines
27 KiB
YAML
856 lines
27 KiB
YAML
# BiologicalObject Class
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# Models biological specimens in natural history collections
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#
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# Created January 2026 to support:
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# - Natural history museums with zoological/botanical collections
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# - Botanical gardens with herbarium specimens
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# - Zoos with specimen archives
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# - Research centers with biological reference collections
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#
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# Key relationships:
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# BiologicalObject --is_a--> ExhibitedObject (inherits base object properties)
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# BiologicalObject --has_preservation--> PreservationMethodEnum
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# BiologicalObject --collected_at--> CustodianPlace
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# BiologicalObject --collected_by--> Person/collector
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# BiologicalObject --part_of--> Collection
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#
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# CIDOC-CRM: E20_Biological_Object - "Physical objects that have been produced by
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# biological processes... includes organisms, parts of organisms, and biological
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# products."
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id: https://nde.nl/ontology/hc/class/BiologicalObject
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name: BiologicalObject
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title: Biological Object Class
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prefixes:
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linkml: https://w3id.org/linkml/
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hc: https://nde.nl/ontology/hc/
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schema: http://schema.org/
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crm: http://www.cidoc-crm.org/cidoc-crm/
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dcterms: http://purl.org/dc/terms/
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skos: http://www.w3.org/2004/02/skos/core#
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dwc: http://rs.tdwg.org/dwc/terms/
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gbif: http://rs.gbif.org/terms/
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aat: http://vocab.getty.edu/aat/
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imports:
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- linkml:types
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- ../metadata
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- ./TimeSpan
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- ./CustodianPlace
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- ../enums/PreservationMethodEnum
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- ../slots/wikidata_id
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default_prefix: hc
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classes:
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BiologicalObject:
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class_uri: crm:E20_Biological_Object
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annotations:
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custodian_types: '["B", "M", "R"]'
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custodian_types_rationale: |
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BiologicalObject is primarily relevant to:
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- Botanical gardens/zoos (B): Living collections, herbaria, specimen archives
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- Museums (M): Natural history museums with zoological/botanical collections
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- Research centers (R): Biological reference collections, type specimens
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specificity_score: 0.5
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specificity_rationale: General heritage class.
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specificity_annotation_timestamp: '2026-01-05T10:51:51Z'
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specificity_annotation_agent: opencode-claude-sonnet-4
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template_specificity:
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archive_search: 0.5
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museum_search: 0.5
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library_search: 0.5
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collection_discovery: 0.5
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person_research: 0.5
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location_browse: 0.5
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identifier_lookup: 0.5
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organizational_change: 0.5
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digital_platform: 0.5
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general_heritage: 0.5
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description: |
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A biological specimen or natural history object held in a heritage collection.
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Models organisms, parts of organisms, or biological products preserved for
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scientific study, education, or display.
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**CIDOC-CRM Alignment**:
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E20_Biological_Object - "Physical objects that have been produced by
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biological processes and include organisms, parts of organisms, and
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biological products."
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**Key Distinction from ExhibitedObject**:
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| Concept | Class | Example |
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|---------|-------|---------|
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| General museum object | ExhibitedObject | "Girl with a Pearl Earring" |
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| **Biological specimen** | **BiologicalObject** | **Dodo skeleton** |
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| Archaeological find | ExhibitedObject | Roman pottery |
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**When to Use BiologicalObject**:
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Use for specimens that are primarily biological in nature:
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- Taxidermy mounts (mammals, birds, fish)
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- Study skins and skeletal material
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- Herbarium specimens (pressed plants)
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- Wet specimens (fluid-preserved animals)
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- Fossils of organisms
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- Entomological collections (pinned insects)
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- Paleontological specimens
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- Living collection records (botanical gardens, zoos)
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**Darwin Core Integration**:
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BiologicalObject aligns with Darwin Core (TDWG) occurrence/specimen standards:
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- `taxon_name` → dwc:scientificName
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- `collection_date` → dwc:eventDate
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- `collector` → dwc:recordedBy
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- `preservation_method` → dwc:preparations
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- `gbif_id` → dwc:occurrenceID (GBIF)
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**Taxonomic Data Model**:
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```
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BiologicalObject
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│
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├── taxon_name (scientific name: "Raphus cucullatus")
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│ │
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│ ├── common_name ("Dodo")
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│ ├── taxonomic_rank (SPECIES)
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│ ├── taxonomic_authority ("Linnaeus, 1758")
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│ └── higher_classification (Aves → Columbiformes → Columbidae)
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│
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├── specimen_data
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│ │
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│ ├── specimen_type (HOLOTYPE, PARATYPE, etc.)
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│ ├── is_type_specimen (boolean)
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│ ├── sex (MALE, FEMALE, UNKNOWN)
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│ ├── life_stage (ADULT, JUVENILE, LARVA, etc.)
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│ └── part_type (SKELETON, SKIN, SHELL, etc.)
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│
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├── preservation
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│ │
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│ ├── preservation_method (PreservationMethodEnum)
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│ └── preservative_details (specific chemicals, methods)
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│
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└── collection_event
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│
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├── collection_date (when collected)
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├── collection_location (where collected)
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├── collector (who collected)
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└── field_number (collector's field ID)
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```
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**Conservation Status Integration**:
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For specimens of conservation-sensitive species, BiologicalObject supports:
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- IUCN Red List status tracking
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- CITES appendix listing
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- Provenance documentation for legal compliance
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**Example**:
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Oxford Dodo specimen at Oxford University Museum of Natural History:
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- taxon_name: "Raphus cucullatus"
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- common_name: "Dodo"
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- specimen_type: Historical specimen
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- preservation_method: SKELETON (partial)
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- significance: Last reliably dated dodo remains
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exact_mappings:
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- crm:E20_Biological_Object
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close_mappings:
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- dwc:Occurrence
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- dwc:Organism
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- schema:Taxon
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related_mappings:
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- crm:E19_Physical_Object
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- crm:E22_Human-Made_Object
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- gbif:Specimen
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is_a: ExhibitedObject
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slots:
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# Taxonomic identification
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- taxon_name
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- common_name
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- common_name_language
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- taxonomic_rank
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- taxonomic_authority
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- higher_classification
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- taxon_remarks
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- identification_qualifier
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- identified_by
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- date_identified
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# Specimen characterization
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- specimen_type
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- is_type_specimen
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- type_status
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- sex
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- life_stage
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- part_type
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- specimen_count
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# Preservation
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- preservation_method
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- preservative_details
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- preparation_date
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- prepared_by
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# Collection event
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- collection_date
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- collection_location
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- collection_locality_text
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- collector
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- field_number
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- habitat
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- associated_taxa
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# Conservation/Legal
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- iucn_status
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- cites_appendix
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- legal_provenance_notes
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# External identifiers
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- gbif_id
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- bold_id
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- genbank_accessions
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slot_usage:
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taxon_name:
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required: true
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range: string
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slot_uri: dwc:scientificName
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description: |
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Scientific name (Linnean binomial or trinomial).
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Include author and year for formal nomenclature.
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**Format**: "Genus species (Author, Year)"
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**Examples**:
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- "Raphus cucullatus (Linnaeus, 1758)"
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- "Tyrannosaurus rex Osborn, 1905"
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- "Quercus robur L."
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examples:
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- value: "Raphus cucullatus (Linnaeus, 1758)"
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description: "Dodo with nomenclatural authority"
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- value: "Panthera leo"
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description: "Lion (authority omitted)"
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common_name:
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required: false
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range: string
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multivalued: true
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slot_uri: dwc:vernacularName
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description: |
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Common/vernacular name(s) in one or more languages.
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Use common_name_language to specify language.
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examples:
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- value: "Dodo"
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- value: "Lion"
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- value: "Coast Redwood"
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common_name_language:
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required: false
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range: string
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multivalued: true
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slot_uri: dcterms:language
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description: |
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Language code(s) for common names (ISO 639-1 or 639-3).
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Corresponds to common_name list by position.
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examples:
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- value: "en"
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- value: "nl"
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taxonomic_rank:
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required: false
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range: string
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slot_uri: dwc:taxonRank
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description: |
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Taxonomic rank of the identification.
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**Values**: KINGDOM, PHYLUM, CLASS, ORDER, FAMILY, GENUS, SPECIES,
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SUBSPECIES, VARIETY, FORM
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examples:
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- value: "SPECIES"
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- value: "SUBSPECIES"
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- value: "GENUS"
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description: "When only identified to genus level"
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taxonomic_authority:
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required: false
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range: string
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slot_uri: dwc:scientificNameAuthorship
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description: |
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The authorship information for the scientific name.
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**Format**: "Author, Year" or "(Author, Year)" for recombinations
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examples:
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- value: "Linnaeus, 1758"
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- value: "(Gray, 1821)"
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description: "Parentheses indicate original genus differs"
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higher_classification:
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required: false
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range: string
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slot_uri: dwc:higherClassification
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description: |
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Full taxonomic hierarchy from kingdom to genus.
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**Format**: Pipe-separated: "Kingdom|Phylum|Class|Order|Family|Genus"
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examples:
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- value: "Animalia|Chordata|Aves|Columbiformes|Columbidae|Raphus"
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description: "Dodo classification"
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taxon_remarks:
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required: false
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range: string
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slot_uri: dwc:taxonRemarks
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description: |
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Notes about taxonomic identification, uncertainties, or changes.
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examples:
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- value: "Previously classified as Didus ineptus"
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identification_qualifier:
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required: false
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range: string
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slot_uri: dwc:identificationQualifier
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description: |
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Qualifier for uncertain identifications.
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**Values**: "cf." (compare with), "aff." (affinity with), "?" (uncertain)
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examples:
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- value: "cf."
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description: "Uncertain, compare with named taxon"
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- value: "aff."
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description: "Related to but distinct from named taxon"
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identified_by:
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required: false
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range: string
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multivalued: true
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slot_uri: dwc:identifiedBy
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description: |
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Person(s) who made the taxonomic identification.
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examples:
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- value: "Dr. Jane Smith"
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date_identified:
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required: false
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range: date
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slot_uri: dwc:dateIdentified
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description: |
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Date when the current identification was made.
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examples:
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- value: "2020-03-15"
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specimen_type:
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required: false
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range: string
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slot_uri: dwc:typeStatus
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description: |
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Nomenclatural type status if applicable.
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**Values**: HOLOTYPE, PARATYPE, SYNTYPE, LECTOTYPE, NEOTYPE,
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TOPOTYPE, ISOTYPE (plants), TYPE (informal)
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examples:
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- value: "HOLOTYPE"
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- value: "PARATYPE"
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is_type_specimen:
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required: false
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range: boolean
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description: |
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Whether this is a nomenclatural type specimen.
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True if specimen has any type status (holotype, paratype, etc.)
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examples:
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- value: true
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description: "Type specimen"
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type_status:
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required: false
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range: string
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slot_uri: dwc:typeStatus
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description: |
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Full type status statement including taxon name.
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**Format**: "Type status of Taxon Name Author, Year"
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examples:
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- value: "Holotype of Raphus cucullatus Linnaeus, 1758"
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sex:
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required: false
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range: string
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slot_uri: dwc:sex
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description: |
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Sex of the organism.
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**Values**: MALE, FEMALE, HERMAPHRODITE, UNKNOWN, NOT_APPLICABLE
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examples:
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- value: "MALE"
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- value: "FEMALE"
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- value: "UNKNOWN"
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life_stage:
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required: false
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range: string
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slot_uri: dwc:lifeStage
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description: |
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Life stage of the organism when collected/preserved.
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**Values vary by taxon**:
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- Vertebrates: ADULT, JUVENILE, SUBADULT, NEONATE
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- Insects: ADULT, LARVA, PUPA, NYMPH, EGG
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- Plants: FLOWERING, FRUITING, VEGETATIVE, SEED
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examples:
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- value: "ADULT"
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- value: "LARVA"
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- value: "FLOWERING"
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part_type:
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required: false
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range: string
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multivalued: true
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slot_uri: dwc:preparations
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description: |
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Part(s) of organism represented in this specimen.
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**Values**: WHOLE_ORGANISM, SKELETON, SKULL, SKIN, SHELL,
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WING, LEG, FEATHER, TISSUE, DNA, LEAF, FLOWER, ROOT, SEED
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examples:
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- value: "SKELETON"
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- value: "SKULL"
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- value: "SKIN"
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specimen_count:
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required: false
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range: integer
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slot_uri: dwc:individualCount
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description: |
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Number of individuals represented by this specimen record.
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Default is 1 for most specimens.
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examples:
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- value: 1
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- value: 50
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description: "Lot of 50 insects on one pin/slide"
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preservation_method:
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required: false
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range: PreservationMethodEnum
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slot_uri: dwc:preparations
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description: |
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Primary preservation method used for this specimen.
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See PreservationMethodEnum for full list of values.
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examples:
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- value: TAXIDERMY_MOUNT
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- value: FLUID_ETHANOL
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- value: DRIED_PRESSED
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- value: FROZEN_TISSUE
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preservative_details:
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required: false
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range: string
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description: |
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Specific details about preservation (concentrations, solutions, etc.).
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examples:
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- value: "70% ethanol"
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- value: "Formalin-fixed, ethanol-transferred"
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- value: "Silica gel dried, stored at -20°C"
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preparation_date:
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required: false
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range: date
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description: |
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Date when specimen was prepared/preserved.
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May differ from collection date.
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examples:
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- value: "2020-06-15"
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prepared_by:
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required: false
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range: string
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slot_uri: crm:P14_carried_out_by
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description: |
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Person or institution who prepared the specimen.
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examples:
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- value: "Natural History Museum Preparation Lab"
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- value: "J. van der Berg"
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collection_date:
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required: false
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range: string
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slot_uri: dwc:eventDate
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description: |
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Date when specimen was collected in the field.
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**Format**: ISO 8601 (YYYY-MM-DD) or range (YYYY-MM-DD/YYYY-MM-DD)
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Can also use text for historical specimens with approximate dates.
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examples:
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- value: "2020-06-15"
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- value: "2020-06/2020-07"
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description: "Collected sometime in June-July 2020"
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- value: "1870s"
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description: "Historical specimen with approximate date"
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collection_location:
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required: false
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range: CustodianPlace
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inlined: true
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slot_uri: dwc:locality
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description: |
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Structured location where specimen was collected.
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Use for geocoded locations with coordinates.
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examples:
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- value:
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place_name: "Mauritius"
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country: "MU"
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latitude: -20.2
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longitude: 57.5
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collection_locality_text:
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required: false
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range: string
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slot_uri: dwc:verbatimLocality
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description: |
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Verbatim locality description as recorded on label.
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Preserves original text for historical specimens.
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examples:
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- value: "Mauritius, near Port Louis, in forest"
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- value: "Indonesia: Java: Mt. Gede, 1500m"
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collector:
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required: false
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range: string
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multivalued: true
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slot_uri: dwc:recordedBy
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description: |
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Person(s) who collected the specimen.
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examples:
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- value: "Alfred Russel Wallace"
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- value: "Charles Darwin"
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field_number:
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required: false
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range: string
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slot_uri: dwc:fieldNumber
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description: |
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Collector's original field number or catalog number.
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examples:
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- value: "ARW-1234"
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- value: "CD-HMS Beagle-567"
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habitat:
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required: false
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range: string
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slot_uri: dwc:habitat
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description: |
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Description of habitat where specimen was found.
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examples:
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- value: "Tropical rainforest, understory"
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- value: "Coral reef, depth 15m"
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associated_taxa:
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required: false
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range: string
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multivalued: true
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slot_uri: dwc:associatedTaxa
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description: |
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Other taxa associated with this specimen (host, parasite, symbiont).
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**Format**: "relationship:Taxon name"
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examples:
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- value: "host:Quercus robur"
|
|
description: "Insect collected from oak tree"
|
|
- value: "parasite of:Cervus elaphus"
|
|
iucn_status:
|
|
required: false
|
|
range: string
|
|
description: |
|
|
IUCN Red List conservation status.
|
|
|
|
**Values**: EX (Extinct), EW (Extinct in Wild), CR (Critically Endangered),
|
|
EN (Endangered), VU (Vulnerable), NT (Near Threatened), LC (Least Concern),
|
|
DD (Data Deficient), NE (Not Evaluated)
|
|
examples:
|
|
- value: "EX"
|
|
description: "Extinct (e.g., Dodo)"
|
|
- value: "CR"
|
|
description: "Critically Endangered"
|
|
cites_appendix:
|
|
required: false
|
|
range: string
|
|
description: |
|
|
CITES (Convention on International Trade in Endangered Species) listing.
|
|
|
|
**Values**: APPENDIX_I, APPENDIX_II, APPENDIX_III, NOT_LISTED
|
|
|
|
Important for legal compliance in specimen transfers.
|
|
examples:
|
|
- value: "APPENDIX_I"
|
|
description: "Most endangered, trade prohibited"
|
|
legal_provenance_notes:
|
|
required: false
|
|
range: string
|
|
description: |
|
|
Notes on legal status and provenance for conservation-sensitive specimens.
|
|
|
|
Document pre-CITES collection, permits, legal transfers.
|
|
examples:
|
|
- value: "Collected pre-CITES (1975). Import permit #12345."
|
|
gbif_id:
|
|
required: false
|
|
range: string
|
|
slot_uri: dwc:occurrenceID
|
|
description: |
|
|
Global Biodiversity Information Facility occurrence ID.
|
|
Links specimen to GBIF occurrence record.
|
|
examples:
|
|
- value: "https://www.gbif.org/occurrence/1234567890"
|
|
bold_id:
|
|
required: false
|
|
range: string
|
|
description: |
|
|
Barcode of Life Data System (BOLD) record ID.
|
|
Links to DNA barcode data.
|
|
examples:
|
|
- value: "BOLD:AAA0001"
|
|
genbank_accessions:
|
|
required: false
|
|
range: string
|
|
multivalued: true
|
|
description: |
|
|
NCBI GenBank accession numbers for sequences from this specimen.
|
|
examples:
|
|
- value: "MW123456"
|
|
- value: "MN987654"
|
|
comments:
|
|
- "BiologicalObject extends ExhibitedObject with biological specimen-specific\
|
|
\ fields"
|
|
- "Aligned with Darwin Core (TDWG) vocabulary for biodiversity data"
|
|
- "Supports natural history museum, botanical garden, and zoo collections"
|
|
- "Includes taxonomic, preservation, collection event, and conservation data"
|
|
- "Links to GBIF, BOLD, and GenBank for molecular data integration"
|
|
see_also:
|
|
- "https://cidoc-crm.org/html/cidoc_crm_v7.1.3.html#E20"
|
|
- "https://dwc.tdwg.org/terms/"
|
|
- "https://www.gbif.org/"
|
|
- "https://www.iucnredlist.org/"
|
|
examples:
|
|
- value:
|
|
object_id: "https://nde.nl/ontology/hc/object/oum-dodo-head"
|
|
object_name: "Oxford Dodo"
|
|
object_description: |
|
|
The only surviving dodo soft tissue - a head with preserved skin and
|
|
feathers, plus associated foot. The most complete dodo specimen known.
|
|
Donated by Elias Ashmole in 1683.
|
|
taxon_name: "Raphus cucullatus (Linnaeus, 1758)"
|
|
common_name:
|
|
- "Dodo"
|
|
- "Dronte"
|
|
taxonomic_rank: "SPECIES"
|
|
higher_classification: "Animalia|Chordata|Aves|Columbiformes|Columbidae|Raphus"
|
|
part_type:
|
|
- "HEAD"
|
|
- "FOOT"
|
|
preservation_method: DRIED_WHOLE
|
|
collection_date: "pre-1662"
|
|
collection_location:
|
|
place_name: "Mauritius"
|
|
country: "MU"
|
|
iucn_status: "EX"
|
|
current_keeper: "https://nde.nl/ontology/hc/custodian/uk/oxford-museum-natural-history"
|
|
accession_number: "OUM 11605"
|
|
wikidata_id: "Q193493"
|
|
description: "Oxford Dodo - most complete dodo specimen, Oxford University\
|
|
\ Museum"
|
|
- value:
|
|
object_id: "https://nde.nl/ontology/hc/object/naturalis-megatherium"
|
|
object_name: "Megatherium skeleton"
|
|
object_description: |
|
|
Nearly complete skeleton of giant ground sloth from Pleistocene Argentina.
|
|
One of the finest examples of this extinct megafauna.
|
|
taxon_name: "Megatherium americanum Cuvier, 1796"
|
|
common_name:
|
|
- "Giant Ground Sloth"
|
|
taxonomic_rank: "SPECIES"
|
|
part_type:
|
|
- "SKELETON"
|
|
preservation_method: FOSSIL_PREPARED
|
|
collection_locality_text: "Argentina, Buenos Aires Province"
|
|
iucn_status: "EX"
|
|
current_keeper: "https://nde.nl/ontology/hc/custodian/nl/naturalis"
|
|
description: "Megatherium skeleton at Naturalis Biodiversity Center"
|
|
- value:
|
|
object_id: "https://nde.nl/ontology/hc/object/kew-type-specimen"
|
|
object_name: "Quercus robur type specimen"
|
|
object_description: |
|
|
Herbarium type specimen of English Oak collected by Linnaeus.
|
|
taxon_name: "Quercus robur L."
|
|
common_name:
|
|
- "English Oak"
|
|
- "Pedunculate Oak"
|
|
taxonomic_rank: "SPECIES"
|
|
taxonomic_authority: "Linnaeus, 1753"
|
|
specimen_type: "LECTOTYPE"
|
|
is_type_specimen: true
|
|
type_status: "Lectotype of Quercus robur L., designated by Schwarz (1936)"
|
|
part_type:
|
|
- "LEAF"
|
|
- "FLOWER"
|
|
preservation_method: DRIED_PRESSED
|
|
collection_date: "1750s"
|
|
collector:
|
|
- "Carl Linnaeus"
|
|
current_keeper: "https://nde.nl/ontology/hc/custodian/uk/royal-botanic-gardens-kew"
|
|
description: "Oak type specimen at Royal Botanic Gardens, Kew"
|
|
|
|
# Slot definitions (not inherited from ExhibitedObject)
|
|
slots:
|
|
taxon_name:
|
|
description: Scientific name (Linnean binomial)
|
|
range: string
|
|
slot_uri: dwc:scientificName
|
|
|
|
common_name:
|
|
description: Common/vernacular name(s)
|
|
range: string
|
|
multivalued: true
|
|
slot_uri: dwc:vernacularName
|
|
|
|
common_name_language:
|
|
description: Language code for common names
|
|
range: string
|
|
multivalued: true
|
|
slot_uri: dcterms:language
|
|
|
|
taxonomic_rank:
|
|
description: Taxonomic rank (SPECIES, GENUS, etc.)
|
|
range: string
|
|
slot_uri: dwc:taxonRank
|
|
|
|
taxonomic_authority:
|
|
description: Author and year of scientific name
|
|
range: string
|
|
slot_uri: dwc:scientificNameAuthorship
|
|
|
|
higher_classification:
|
|
description: Full taxonomic hierarchy
|
|
range: string
|
|
slot_uri: dwc:higherClassification
|
|
|
|
taxon_remarks:
|
|
description: Notes about taxonomic identification
|
|
range: string
|
|
slot_uri: dwc:taxonRemarks
|
|
|
|
identification_qualifier:
|
|
description: Qualifier for uncertain identifications (cf., aff.)
|
|
range: string
|
|
slot_uri: dwc:identificationQualifier
|
|
|
|
identified_by:
|
|
description: Person who made the identification
|
|
range: string
|
|
multivalued: true
|
|
slot_uri: dwc:identifiedBy
|
|
|
|
date_identified:
|
|
description: Date of current identification
|
|
range: date
|
|
slot_uri: dwc:dateIdentified
|
|
|
|
specimen_type:
|
|
description: Nomenclatural type status
|
|
range: string
|
|
slot_uri: dwc:typeStatus
|
|
|
|
is_type_specimen:
|
|
description: Whether this is a type specimen
|
|
range: boolean
|
|
|
|
type_status:
|
|
description: Full type status statement
|
|
range: string
|
|
slot_uri: dwc:typeStatus
|
|
|
|
sex:
|
|
description: Sex of organism
|
|
range: string
|
|
slot_uri: dwc:sex
|
|
|
|
life_stage:
|
|
description: Life stage when collected
|
|
range: string
|
|
slot_uri: dwc:lifeStage
|
|
|
|
part_type:
|
|
description: Part(s) of organism represented
|
|
range: string
|
|
multivalued: true
|
|
slot_uri: dwc:preparations
|
|
|
|
specimen_count:
|
|
description: Number of individuals in specimen
|
|
range: integer
|
|
slot_uri: dwc:individualCount
|
|
|
|
preservation_method:
|
|
description: Primary preservation method
|
|
range: PreservationMethodEnum
|
|
slot_uri: dwc:preparations
|
|
|
|
preservative_details:
|
|
description: Specific preservation details
|
|
range: string
|
|
|
|
preparation_date:
|
|
description: Date specimen was prepared
|
|
range: date
|
|
|
|
prepared_by:
|
|
description: Person/institution that prepared specimen
|
|
range: string
|
|
slot_uri: crm:P14_carried_out_by
|
|
|
|
collection_date:
|
|
description: Date specimen was collected
|
|
range: string
|
|
slot_uri: dwc:eventDate
|
|
|
|
collection_location:
|
|
description: Structured collection location
|
|
range: CustodianPlace
|
|
slot_uri: dwc:locality
|
|
|
|
collection_locality_text:
|
|
description: Verbatim locality description
|
|
range: string
|
|
slot_uri: dwc:verbatimLocality
|
|
|
|
collector:
|
|
description: Person(s) who collected specimen
|
|
range: string
|
|
multivalued: true
|
|
slot_uri: dwc:recordedBy
|
|
|
|
field_number:
|
|
description: Collector's field number
|
|
range: string
|
|
slot_uri: dwc:fieldNumber
|
|
|
|
habitat:
|
|
description: Habitat description
|
|
range: string
|
|
slot_uri: dwc:habitat
|
|
|
|
associated_taxa:
|
|
description: Associated taxa (host, parasite, etc.)
|
|
range: string
|
|
multivalued: true
|
|
slot_uri: dwc:associatedTaxa
|
|
|
|
iucn_status:
|
|
description: IUCN Red List status
|
|
range: string
|
|
|
|
cites_appendix:
|
|
description: CITES appendix listing
|
|
range: string
|
|
|
|
legal_provenance_notes:
|
|
description: Notes on legal status for CITES species
|
|
range: string
|
|
|
|
gbif_id:
|
|
description: GBIF occurrence ID
|
|
range: string
|
|
slot_uri: dwc:occurrenceID
|
|
|
|
bold_id:
|
|
description: BOLD barcode record ID
|
|
range: string
|
|
|
|
genbank_accessions:
|
|
description: GenBank accession numbers
|
|
range: string
|
|
multivalued: true
|