1f8776bef4
- Updated manifest.json with new generated timestamp. - Added close mappings to APIRequest and Administration classes. - Renamed slots in AccessPolicy to has_or_had_embargo_end_date and has_or_had_embargo_reason. - Changed class_uri for Accumulation to rico:AccumulationRelation and updated description. - Added exact mappings to Altitude, AppellationType, and ArchitecturalStyle classes. - Removed deprecated slots from CollectionManagementSystem and updated has_or_had_type. - Added new slots for has_or_had_embargo_end_date and has_or_had_embargo_reason. - Updated slot definitions for has_or_had_assessment, has_or_had_sequence_index, and others with new URIs and mappings. - Removed unused slots end_seconds and end_time. - Added new slot definitions for has_or_had_exhibition_type, has_or_had_extent_text, and is_or_was_documented_by.
88 lines
3.3 KiB
YAML
88 lines
3.3 KiB
YAML
id: https://nde.nl/ontology/hc/class/Taxon
|
|
name: taxon_class
|
|
title: Taxon Class
|
|
description: 'Biological taxon (species, genus, family, etc.) associated with heritage objects.
|
|
|
|
Follows Schema.org Taxon pattern for biological classification. Used primarily for natural history collections.'
|
|
prefixes:
|
|
linkml: https://w3id.org/linkml/
|
|
hc: https://nde.nl/ontology/hc/
|
|
schema: http://schema.org/
|
|
dwc: http://rs.tdwg.org/dwc/terms/
|
|
skos: http://www.w3.org/2004/02/skos/core#
|
|
default_prefix: hc
|
|
imports:
|
|
- linkml:types
|
|
- ../slots/id
|
|
- ../slots/has_or_had_label
|
|
- ../slots/has_or_had_description
|
|
- ../slots/specificity_annotation
|
|
- ../slots/has_or_had_score
|
|
- ./SpecificityAnnotation
|
|
- ./TemplateSpecificityScore
|
|
- ./TemplateSpecificityType
|
|
- ./TemplateSpecificityTypes
|
|
classes:
|
|
Taxon:
|
|
class_uri: schema:Taxon
|
|
description: 'A biological taxon (species, genus, family, order, etc.) that can be associated with heritage objects in natural history collections.
|
|
|
|
**USE CASES**:
|
|
|
|
1. **Specimen Classification**: Link BiologicalObject to its taxonomic identification 2. **Collection Scope**: Define taxa covered by a natural history collection 3. **Research Context**: Document species studied in research archives
|
|
|
|
**DARWIN CORE ALIGNMENT**:
|
|
|
|
Uses Darwin Core terms for taxonomic data: - dwc:scientificName - Full scientific name - dwc:taxonRank - Level in hierarchy (species, genus, etc.) - dwc:kingdom, dwc:phylum, dwc:class, dwc:order, dwc:family, dwc:genus
|
|
|
|
**EXTERNAL IDENTIFIERS**:
|
|
|
|
Link to authoritative taxonomic databases: - GBIF (Global Biodiversity Information Facility) - NCBI Taxonomy - Wikidata (Q-numbers for taxa) - BOLD (Barcode of Life)'
|
|
exact_mappings:
|
|
- schema:Taxon
|
|
- dwc:Taxon
|
|
close_mappings:
|
|
- skos:Concept
|
|
slots:
|
|
- id
|
|
- has_or_had_label
|
|
- has_or_had_description
|
|
- specificity_annotation
|
|
- has_or_had_score
|
|
slot_usage:
|
|
id:
|
|
identifier: true
|
|
required: true
|
|
range: uriorcurie
|
|
pattern: ^https://nde\.nl/ontology/hc/taxon/[a-z0-9-]+$
|
|
examples:
|
|
- value: https://nde.nl/ontology/hc/taxon/raphus-cucullatus
|
|
description: Dodo (extinct species)
|
|
has_or_had_label:
|
|
description: Scientific name of the taxon.
|
|
range: string
|
|
required: true
|
|
examples:
|
|
- value: Raphus cucullatus
|
|
description: Dodo scientific name
|
|
- value: Homo sapiens
|
|
description: Human scientific name
|
|
description:
|
|
range: string
|
|
examples:
|
|
- value: Extinct flightless bird endemic to Mauritius
|
|
comments:
|
|
- Used for taxonomic associations in natural history collections
|
|
- Link to GBIF, NCBI, or Wikidata for authoritative identifiers
|
|
- Range should be narrowed via slot_usage when used
|
|
examples:
|
|
- value:
|
|
id: https://nde.nl/ontology/hc/taxon/raphus-cucullatus
|
|
has_or_had_label: Raphus cucullatus
|
|
description: Dodo - an extinct flightless bird that was endemic to the island of Mauritius. Last confirmed sighting in 1662.
|
|
description: Dodo taxon for natural history specimen
|
|
annotations:
|
|
specificity_score: 0.1
|
|
specificity_rationale: Generic utility class/slot created during migration
|
|
custodian_types: "['*']"
|
|
custodian_types_rationale: Universal utility concept
|