1f8776bef4
- Updated manifest.json with new generated timestamp. - Added close mappings to APIRequest and Administration classes. - Renamed slots in AccessPolicy to has_or_had_embargo_end_date and has_or_had_embargo_reason. - Changed class_uri for Accumulation to rico:AccumulationRelation and updated description. - Added exact mappings to Altitude, AppellationType, and ArchitecturalStyle classes. - Removed deprecated slots from CollectionManagementSystem and updated has_or_had_type. - Added new slots for has_or_had_embargo_end_date and has_or_had_embargo_reason. - Updated slot definitions for has_or_had_assessment, has_or_had_sequence_index, and others with new URIs and mappings. - Removed unused slots end_seconds and end_time. - Added new slot definitions for has_or_had_exhibition_type, has_or_had_extent_text, and is_or_was_documented_by.
95 lines
3.5 KiB
YAML
95 lines
3.5 KiB
YAML
id: https://nde.nl/ontology/hc/class/BOLDIdentifier
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name: bold_identifier_class
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title: BOLD Identifier Class
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description: 'Barcode of Life Data System (BOLD) identifier for biological specimens.
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Links heritage biological objects to their DNA barcode records in BOLD.'
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prefixes:
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linkml: https://w3id.org/linkml/
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hc: https://nde.nl/ontology/hc/
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dcterms: http://purl.org/dc/terms/
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schema: http://schema.org/
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default_prefix: hc
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imports:
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- linkml:types
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- ../slots/id
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- ../slots/identifier_value
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- ../slots/identifier_url
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- ../slots/has_or_had_description
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- ../slots/specificity_annotation
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- ../slots/has_or_had_score
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- ./SpecificityAnnotation
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- ./TemplateSpecificityScore
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- ./TemplateSpecificityType
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- ./TemplateSpecificityTypes
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classes:
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BOLDIdentifier:
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class_uri: schema:PropertyValue
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description: 'A Barcode of Life Data System (BOLD) identifier linking a biological specimen to its DNA barcode record.
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**WHAT IS BOLD?**
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BOLD (Barcode of Life Data System) is an online workbench and database for DNA barcoding. It stores specimen data and DNA barcode sequences, enabling species identification through DNA.
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**USE CASES**:
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1. **Specimen Identification**: Link natural history specimens to DNA data 2. **Species Verification**: Cross-reference morphological IDs with DNA barcodes 3. **Research Provenance**: Document genetic sampling of collection objects
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**IDENTIFIER FORMAT**:
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BOLD identifiers follow the pattern: BOLD:XXXNNN - Process IDs: BOLD:AAA0001 - Sample IDs: Institution-specific prefixes
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**EXTERNAL LINKS**:
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- BOLD Systems: https://boldsystems.org/ - Record URL pattern: https://boldsystems.org/index.php/Public_RecordView?processid={id}'
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exact_mappings:
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- schema:PropertyValue
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close_mappings:
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- dcterms:identifier
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slots:
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- id
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- identifier_value
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- identifier_url
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- has_or_had_description
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- specificity_annotation
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- has_or_had_score
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slot_usage:
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id:
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identifier: true
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required: true
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range: uriorcurie
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pattern: ^https://nde\.nl/ontology/hc/bold-id/[A-Z0-9-]+$
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examples:
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- value: https://nde.nl/ontology/hc/bold-id/NLNAT001-21
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description: Dutch natural history specimen BOLD ID
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identifier_value:
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description: The BOLD process ID or sample ID value.
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range: string
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required: true
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pattern: ^[A-Z]{2,5}[0-9]{3,7}(-[0-9]{2})?$
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examples:
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- value: NLNAT001-21
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description: Netherlands natural history specimen 2021
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- value: GBMIN12345-19
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description: UK specimen from 2019
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identifier_url:
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description: URL to the BOLD record page.
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range: uri
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examples:
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- value: https://boldsystems.org/index.php/Public_RecordView?processid=NLNAT001-21
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comments:
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- Used for DNA barcode identifiers in natural history collections
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- Links physical specimens to molecular data
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- Part of global biodiversity identification infrastructure
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examples:
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- value:
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id: https://nde.nl/ontology/hc/bold-id/NLNAT001-21
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identifier_value: NLNAT001-21
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identifier_url: https://boldsystems.org/index.php/Public_RecordView?processid=NLNAT001-21
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description: DNA barcode for Naturalis specimen
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description: BOLD identifier for a Dutch natural history specimen
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annotations:
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specificity_score: 0.1
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specificity_rationale: Generic utility class/slot created during migration
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custodian_types: "['*']"
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custodian_types_rationale: Universal utility concept
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