1516d509cf
- Added `id`, `name`, `title`, and `description` fields to multiple LinkML class YAML files. - Standardized prefixes across all class definitions. - Introduced a new script `fix_linkml_metadata.py` to automate the addition of metadata to class files. - Updated existing class files to ensure compliance with the new metadata structure.
85 lines
3 KiB
Python
85 lines
3 KiB
Python
import os
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import re
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# Directory containing class files
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CLASSES_DIR = "/Users/kempersc/apps/glam/schemas/20251121/linkml/modules/classes/"
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# Fix for was_generated_by
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def fix_was_generated_by(filepath):
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print(f"Checking {filepath} for was_generated_by...")
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try:
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with open(filepath, 'r') as f:
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content = f.read()
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new_content = content
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# Replace usage in slots list
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# - was_generated_by -> - is_or_was_generated_by
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new_content = re.sub(r"(\s+)-\s+was_generated_by\n", r"\1- is_or_was_generated_by\n", new_content)
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# Replace slot usage keys
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# was_generated_by: -> is_or_was_generated_by:
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new_content = re.sub(r"(\s+)was_generated_by:", r"\1is_or_was_generated_by:", new_content)
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# Replace imports
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# - ../slots/was_generated_by -> - ../slots/is_or_was_generated_by
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new_content = new_content.replace("- ../slots/was_generated_by", "- ../slots/is_or_was_generated_by")
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# Fix inline descriptions
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new_content = new_content.replace("`was_generated_by`", "`is_or_was_generated_by`")
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new_content = new_content.replace("was_generated_by link", "is_or_was_generated_by link")
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if new_content != content:
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print(f"Updating {filepath}...")
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with open(filepath, 'w') as f:
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f.write(new_content)
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except Exception as e:
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print(f"Error processing {filepath}: {e}")
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# Fix for was_last_updated_at -> is_or_was_last_updated_at
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def fix_was_last_updated_at(filepath):
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print(f"Checking {filepath} for was_last_updated_at...")
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try:
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with open(filepath, 'r') as f:
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content = f.read()
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new_content = content
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# Replace usage in slots list
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new_content = re.sub(r"(\s+)-\s+was_last_updated_at\n", r"\1- is_or_was_last_updated_at\n", new_content)
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# Replace slot usage keys
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new_content = re.sub(r"(\s+)was_last_updated_at:", r"\1is_or_was_last_updated_at:", new_content)
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# Replace imports
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new_content = new_content.replace("- ../slots/was_last_updated_at", "- ../slots/is_or_was_last_updated_at")
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# Fix inline descriptions
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new_content = new_content.replace("`was_last_updated_at`", "`is_or_was_last_updated_at`")
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if new_content != content:
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print(f"Updating {filepath}...")
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with open(filepath, 'w') as f:
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f.write(new_content)
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except Exception as e:
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print(f"Error processing {filepath}: {e}")
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# Get all class files
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def get_class_files():
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files = []
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for root, _, filenames in os.walk(CLASSES_DIR):
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for filename in filenames:
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if filename.endswith(".yaml"):
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files.append(os.path.join(root, filename))
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return files
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def main():
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files = get_class_files()
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for f in files:
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fix_was_generated_by(f)
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fix_was_last_updated_at(f)
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if __name__ == "__main__":
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main()
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