1f8776bef4
- Updated manifest.json with new generated timestamp. - Added close mappings to APIRequest and Administration classes. - Renamed slots in AccessPolicy to has_or_had_embargo_end_date and has_or_had_embargo_reason. - Changed class_uri for Accumulation to rico:AccumulationRelation and updated description. - Added exact mappings to Altitude, AppellationType, and ArchitecturalStyle classes. - Removed deprecated slots from CollectionManagementSystem and updated has_or_had_type. - Added new slots for has_or_had_embargo_end_date and has_or_had_embargo_reason. - Updated slot definitions for has_or_had_assessment, has_or_had_sequence_index, and others with new URIs and mappings. - Removed unused slots end_seconds and end_time. - Added new slot definitions for has_or_had_exhibition_type, has_or_had_extent_text, and is_or_was_documented_by.
108 lines
3.8 KiB
Python
108 lines
3.8 KiB
Python
import os
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import yaml
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# Directory containing class files
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CLASSES_DIR = "/Users/kempersc/apps/glam/schemas/20251121/linkml/modules/classes/"
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# List of files identified by grep as having "- description" in slots
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FILES_TO_FIX = [
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"StorageConditionPolicy.yaml",
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"FoundingEvent.yaml",
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"CustodianTimelineEvent.yaml",
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"EncompassingBody.yaml",
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"SocialMediaContent.yaml",
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"FindingAid.yaml",
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"BOLDIdentifier.yaml",
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"SocialMediaPost.yaml",
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"Taxon.yaml",
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"ContributingAgency.yaml",
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"Overview.yaml",
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"Diocese.yaml",
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"Jurisdiction.yaml",
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"FunctionType.yaml",
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"StaffRole.yaml",
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"Format.yaml",
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"Photography.yaml",
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"WebLink.yaml",
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"AuditOpinion.yaml",
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"TradeRegister.yaml",
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"Expenses.yaml",
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"Bookplate.yaml",
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"Publication.yaml",
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"Laptop.yaml"
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]
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def fix_file(filename):
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filepath = os.path.join(CLASSES_DIR, filename)
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if not os.path.exists(filepath):
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print(f"File not found: {filename}")
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return
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try:
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with open(filepath, 'r') as f:
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lines = f.readlines()
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new_lines = []
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import_added = False
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has_description_slot = False
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for line in lines:
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# Replace slot usage
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if line.strip() == "- description":
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# Check context (simple check if we are in slots section roughly)
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# Ideally we'd parse YAML but preserving comments/structure is hard with pyyaml
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# This simple replacement works if indentation matches standard
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# (which it seems to in this codebase: " - description")
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new_lines.append(line.replace("- description", "- has_or_had_description"))
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has_description_slot = True
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# Update imports
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elif line.strip() == "- ../slots/description":
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new_lines.append(line.replace("- ../slots/description", "- ../slots/has_or_had_description"))
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import_added = True
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else:
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new_lines.append(line)
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# If we replaced the slot but didn't see an explicit import line to replace,
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# we might need to add the import.
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# However, purely adding lines is tricky with simple string processing without knowing where 'imports:' ends.
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# But if 'description' was valid before, it must have been imported (or implicit?).
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# If it wasn't imported, adding the slot 'has_or_had_description' without import might fail validation
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# IF LinkML requires explicit import for everything.
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# BUT many files here seem to have imports.
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# Let's check if we need to add the import if it wasn't there.
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# A simple heuristic: find 'imports:' line and append after it if not present.
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final_lines = []
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if has_description_slot and not import_added:
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# check if has_or_had_description is already imported
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already_imported = any("has_or_had_description" in l for l in new_lines)
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if not already_imported:
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in_imports = False
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for line in new_lines:
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final_lines.append(line)
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if line.strip().startswith("imports:"):
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final_lines.append(" - ../slots/has_or_had_description\n")
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import_added = True # Handled
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else:
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final_lines = new_lines
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else:
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final_lines = new_lines
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with open(filepath, 'w') as f:
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f.writelines(final_lines)
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print(f"Fixed {filename}")
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except Exception as e:
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print(f"Error processing {filename}: {e}")
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def main():
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for filename in FILES_TO_FIX:
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fix_file(filename)
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if __name__ == "__main__":
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main()
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