fc405445c6
- Removed obsolete slots: `has_or_had_custodian_observation`, `provider`, and `specificity_annotation`. - Updated `has_or_had_score` slot to use `SpecificityScore` class and modified its description and examples. - Added new slots: `end_seconds`, `end_time`, `has_archive_path`, `has_or_had_custodian_name`, `protocol_name`, and `protocol_version`. - Introduced a script `check_annotation_types.py` to validate the presence and structure of `custodian_types` in YAML files. - Added a script `update_specificity.py` to automate updates related to `SpecificityAnnotation` to `SpecificityScore`.
20 lines
735 B
YAML
20 lines
735 B
YAML
id: https://nde.nl/ontology/hc/class/GenBankAccession
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name: GenBankAccession
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title: GenBank Accession
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description: A GenBank accession number for a nucleotide sequence. MIGRATED from genbank_accession slot per Rule 53. Follows BioProject/GenBank identifiers.
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prefixes:
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linkml: https://w3id.org/linkml/
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hc: https://nde.nl/ontology/hc/
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schema: http://schema.org/
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imports:
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- linkml:types
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default_prefix: hc
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classes:
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GenBankAccession:
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is_a: Identifier
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class_uri: schema:PropertyValue
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description: A persistent identifier for a nucleotide sequence in GenBank.
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annotations:
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specificity_score: 0.1
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specificity_rationale: Generic utility class/slot created during migration
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custodian_types: "['*']"
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