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glam/missing_terms_audit.txt
kempersc 7cf10084b4 Implement scripts for schema modifications and ontology verification 
- Added `fix_dual_class_link.py` to remove dual class link references from specified YAML files.
- Created `fix_specific_ghosts.py` to apply specific replacements in YAML files based on defined mappings.
- Introduced `migrate_staff_count.py` to migrate staff count references to a new structure in specified YAML files.
- Developed `migrate_type_slots.py` to replace type-related slots with new identifiers across YAML files.
- Implemented `scan_ghost_references.py` to identify and report ghost references to archived slots and classes in YAML files.
- Added `verify_ontology_terms.py` to verify the presence of ontology terms in specified ontology files against schema definitions.
2026-01-29 17:10:25 +01:00

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schemas/20251121/linkml/01_custodian_name_modular.yaml
schemas/20251121/linkml/archive/refactored/StaffRoles_monolithic_20260108.yaml
schemas/20251121/linkml/archive/refactored/ReadingRoom_monolithic_20260108.yaml
schemas/20251121/linkml/archive/refactored/LanguageProficiency_monolithic_20260108.yaml
schemas/20251121/linkml/archive/refactored/class_metadata_slots_monolithic_20260107.yaml
schemas/20251121/linkml/archive/refactored/CateringPlace_monolithic_20260108.yaml
schemas/20251121/linkml/archive/refactored/EncompassingBody_monolithic_20260108.yaml
schemas/20251121/linkml/archive/refactored/identifier_standards_schema_monolithic_20260108.yaml
schemas/20251121/linkml/archive/refactored/VideoChapter_monolithic_20260108.yaml
schemas/20251121/linkml/archive/refactored/FindingAidType_monolithic_20260108.yaml
schemas/20251121/linkml/archive/refactored/DataServiceEndpoint_monolithic_20260108.yaml
schemas/20251121/linkml/archive/slots/has_or_had_manages_collection.yaml
schemas/20251121/linkml/archive/slots/has_derived_observation.yaml
schemas/20251121/linkml/archive/slots/illustration.yaml
schemas/20251121/linkml/archive/slots/has_or_had_managed_collection.yaml
schemas/20251121/linkml/archive/slots/has_or_had_registration_number.yaml
schemas/20251121/linkml/archive/slots/has_or_had_administrative_expense_archived_20260114.yaml
schemas/20251121/linkml/examples/registration_info_examples.yaml
schemas/20251121/linkml/instances/enums/feature_type.yaml
schemas/20251121/linkml/instances/enums/encompassing_body_type.yaml
schemas/20251121/linkml/instances/enums/agent_type.yaml
schemas/20251121/linkml/instances/enums/source_document_type.yaml
schemas/20251121/linkml/instances/enums/entity_type.yaml
schemas/20251121/linkml/instances/enums/place_specificity.yaml
schemas/20251121/linkml/modules/classes/ExtractionSourceInfo.yaml
schemas/20251121/linkml/modules/classes/RegistrationAuthority.yaml
schemas/20251121/linkml/modules/classes/LegalEntityType.yaml
schemas/20251121/linkml/modules/classes/EnrichmentMethod.yaml
schemas/20251121/linkml/modules/classes/Arrangement.yaml
schemas/20251121/linkml/modules/classes/Methodology.yaml
schemas/20251121/linkml/modules/classes/Carrier.yaml
schemas/20251121/linkml/modules/classes/Agreement.yaml
schemas/20251121/linkml/modules/classes/WikidataArchitecture.yaml
schemas/20251121/linkml/modules/classes/WebObservation.yaml
schemas/20251121/linkml/modules/classes/Observation.yaml
schemas/20251121/linkml/modules/classes/CauseOfDeath.yaml
schemas/20251121/linkml/modules/classes/UpdateFrequency.yaml
schemas/20251121/linkml/modules/classes/Edition.yaml
schemas/20251121/linkml/modules/classes/Acquisition.yaml
schemas/20251121/linkml/modules/classes/EducationFacilityType.yaml
schemas/20251121/linkml/modules/classes/ApplicantRequirement.yaml
schemas/20251121/linkml/modules/classes/EncompassingBodyTypes.yaml
schemas/20251121/linkml/modules/classes/VideoTimeSegment.yaml
schemas/20251121/linkml/modules/classes/CarrierTypes.yaml
schemas/20251121/linkml/modules/classes/StorageCondition.yaml
schemas/20251121/linkml/modules/classes/AnnotationMotivationType.yaml
schemas/20251121/linkml/modules/classes/InternetOfThings.yaml
schemas/20251121/linkml/modules/classes/ApprovalTimeTypes.yaml
schemas/20251121/linkml/modules/classes/DataServiceEndpoint.yaml
schemas/20251121/linkml/modules/classes/WikidataCoordinates.yaml
schemas/20251121/linkml/modules/classes/RejectedGoogleMapsData.yaml
schemas/20251121/linkml/modules/classes/Warehouse.yaml
schemas/20251121/linkml/modules/classes/EBook.yaml
schemas/20251121/linkml/modules/classes/PrimaryDigitalPresenceAssertion.yaml
schemas/20251121/linkml/modules/classes/Item.yaml
schemas/20251121/linkml/modules/classes/Classroom.yaml
schemas/20251121/linkml/modules/classes/InformationCarrier.yaml
schemas/20251121/linkml/modules/classes/Custodian.yaml
schemas/20251121/linkml/modules/classes/EncompassingBody.yaml
schemas/20251121/linkml/modules/classes/ContactDetails.yaml
schemas/20251121/linkml/modules/classes/GoverningBody.yaml
schemas/20251121/linkml/modules/classes/LegalForm.yaml
schemas/20251121/linkml/modules/classes/CollectionType.yaml
schemas/20251121/linkml/modules/classes/WikidataContact.yaml
schemas/20251121/linkml/modules/classes/ExhibitedObject.yaml
schemas/20251121/linkml/modules/classes/DeceasedStatus.yaml
schemas/20251121/linkml/modules/classes/ReconstructionAgent.yaml
schemas/20251121/linkml/modules/classes/CustodianName.yaml
schemas/20251121/linkml/modules/classes/Coordinates.yaml
schemas/20251121/linkml/modules/classes/BirthDate.yaml
schemas/20251121/linkml/modules/classes/TransferPolicy.yaml
schemas/20251121/linkml/modules/classes/Person.yaml
schemas/20251121/linkml/modules/classes/Locker.yaml
schemas/20251121/linkml/modules/classes/SubGuideType.yaml
schemas/20251121/linkml/modules/classes/HistoricBuilding.yaml
schemas/20251121/linkml/modules/classes/HolySacredSiteType.yaml
schemas/20251121/linkml/modules/classes/Event.yaml
schemas/20251121/linkml/modules/classes/CollectionManagementSystem.yaml
schemas/20251121/linkml/modules/classes/ApplicantType.yaml
schemas/20251121/linkml/modules/classes/YoutubeProvenance.yaml
schemas/20251121/linkml/modules/classes/CollectionEvent.yaml
schemas/20251121/linkml/modules/classes/HeritageObject.yaml
schemas/20251121/linkml/modules/classes/ClimateControl.yaml
schemas/20251121/linkml/modules/classes/RequirementStatus.yaml
schemas/20251121/linkml/modules/classes/NormalizedLocation.yaml
schemas/20251121/linkml/modules/classes/LoadingDock.yaml
schemas/20251121/linkml/modules/classes/EducationProviderType.yaml
schemas/20251121/linkml/modules/classes/PlatformSourceReference.yaml
schemas/20251121/linkml/modules/classes/TechnologicalInfrastructureType.yaml
schemas/20251121/linkml/modules/classes/OrganizationalChangeEvent.yaml
schemas/20251121/linkml/modules/classes/Permission.yaml
schemas/20251121/linkml/modules/classes/SourceProvenance.yaml
schemas/20251121/linkml/modules/classes/WebEnrichment.yaml
schemas/20251121/linkml/modules/classes/ReadingRoom.yaml
schemas/20251121/linkml/modules/classes/TransferEvent.yaml
schemas/20251121/linkml/modules/classes/ConfidenceScore.yaml
schemas/20251121/linkml/modules/classes/WebArchiveFailure.yaml
schemas/20251121/linkml/modules/classes/Department.yaml
schemas/20251121/linkml/modules/classes/Administration.yaml
schemas/20251121/linkml/modules/classes/WikidataLocation.yaml
schemas/20251121/linkml/modules/classes/CoFunding.yaml
schemas/20251121/linkml/modules/classes/CatalogSystemType.yaml
schemas/20251121/linkml/modules/classes/AuxiliaryPlace.yaml
schemas/20251121/linkml/modules/classes/Video.yaml
schemas/20251121/linkml/modules/classes/LegalName.yaml
schemas/20251121/linkml/modules/classes/LocationResolution.yaml
schemas/20251121/linkml/modules/classes/OfficialInstitutionType.yaml
schemas/20251121/linkml/modules/classes/FumeHood.yaml
schemas/20251121/linkml/modules/classes/TimespanBlock.yaml
schemas/20251121/linkml/modules/classes/ConflictStatus.yaml
schemas/20251121/linkml/modules/classes/RawSource.yaml
schemas/20251121/linkml/modules/classes/InstitutionalFunction.yaml
schemas/20251121/linkml/modules/classes/AvailabilityStatus.yaml
schemas/20251121/linkml/modules/classes/NonProfitType.yaml
schemas/20251121/linkml/modules/classes/Address.yaml
schemas/20251121/linkml/modules/classes/MuseumRegisterProvenance.yaml
schemas/20251121/linkml/modules/classes/CertaintyLevel.yaml
schemas/20251121/linkml/modules/classes/TimeSpan.yaml
schemas/20251121/linkml/modules/classes/OriginalEntryLocation.yaml
schemas/20251121/linkml/modules/classes/TemporaryLocation.yaml
schemas/20251121/linkml/modules/classes/AddressComponent.yaml
schemas/20251121/linkml/modules/classes/PublicationEvent.yaml
schemas/20251121/linkml/modules/classes/AuctionHouse.yaml
schemas/20251121/linkml/modules/classes/AccessPolicy.yaml
schemas/20251121/linkml/modules/classes/CustodianLegalStatus.yaml
schemas/20251121/linkml/modules/classes/AudioEventSegment.yaml
schemas/20251121/linkml/modules/classes/BudgetStatus.yaml
schemas/20251121/linkml/modules/classes/PermissionType.yaml
schemas/20251121/linkml/modules/classes/DatePrecision.yaml
schemas/20251121/linkml/modules/classes/GeoSpatialPlace.yaml
schemas/20251121/linkml/modules/classes/ApproximationStatus.yaml
schemas/20251121/linkml/modules/classes/AddressType.yaml
schemas/20251121/linkml/modules/classes/TimeSpanTypes.yaml
schemas/20251121/linkml/modules/classes/Format.yaml
schemas/20251121/linkml/modules/classes/EquipmentType.yaml
schemas/20251121/linkml/modules/classes/ConfidenceLevel.yaml
schemas/20251121/linkml/modules/classes/HandsOnFacility.yaml
schemas/20251121/linkml/modules/classes/VideoChapter.yaml
schemas/20251121/linkml/modules/classes/EmailAddress.yaml
schemas/20251121/linkml/modules/classes/TreatmentType.yaml
schemas/20251121/linkml/modules/classes/TimeEntry.yaml
schemas/20251121/linkml/modules/classes/OriginalEntryCoordinates.yaml
schemas/20251121/linkml/modules/classes/AnnotationMotivationTypes.yaml
schemas/20251121/linkml/modules/classes/VideoTranscript.yaml
schemas/20251121/linkml/modules/classes/SourceCoordinates.yaml
schemas/20251121/linkml/modules/classes/Bookplate.yaml
schemas/20251121/linkml/modules/classes/ForkliftAccess.yaml
schemas/20251121/linkml/modules/classes/ChAnnotatorProvenance.yaml
schemas/20251121/linkml/modules/classes/Timestamp.yaml
schemas/20251121/linkml/modules/classes/Standard.yaml
schemas/20251121/linkml/modules/classes/BiologicalObject.yaml
schemas/20251121/linkml/modules/classes/DeviceTypes.yaml
schemas/20251121/linkml/modules/classes/TechnologicalInfrastructureTypes.yaml
schemas/20251121/linkml/modules/classes/YoutubeTranscript.yaml
schemas/20251121/linkml/modules/classes/Collection.yaml
schemas/20251121/linkml/modules/classes/CustodianAdministration.yaml
schemas/20251121/linkml/modules/classes/VideoTextContent.yaml
schemas/20251121/linkml/modules/classes/ConfidenceMeasure.yaml
schemas/20251121/linkml/modules/classes/EquipmentTypes.yaml
schemas/20251121/linkml/modules/classes/FieldOfStudy.yaml
schemas/20251121/linkml/modules/classes/archive/EducationCredential_archived_20260125.yaml
schemas/20251121/linkml/modules/enums/RoomUnitTypeEnum.yaml
schemas/20251121/linkml/modules/enums/EntityTypeEnum.yaml
schemas/20251121/linkml/modules/enums/ExhibitedObjectTypeEnum.yaml
schemas/20251121/linkml/modules/enums/AgentTypeEnum.yaml
schemas/20251121/linkml/modules/enums/EncompassingBodyTypeEnum.yaml
schemas/20251121/linkml/modules/enums/FeatureTypeEnum.yaml
schemas/20251121/linkml/modules/enums/DualClassPatternEnum.yaml
schemas/20251121/linkml/modules/enums/AuthorRoleEnum.yaml
schemas/20251121/linkml/modules/enums/LanguageProficiencyEnum.yaml
schemas/20251121/linkml/modules/enums/LoanStatusEnum.yaml
schemas/20251121/linkml/modules/enums/EventStatusEnum.yaml
schemas/20251121/linkml/modules/enums/QuantityTypeEnum.yaml
schemas/20251121/linkml/modules/enums/PlaceSpecificityEnum.yaml
schemas/20251121/linkml/modules/enums/EventTypeEnum.yaml
schemas/20251121/linkml/modules/enums/ConservationStatusEnum.yaml
schemas/20251121/linkml/modules/enums/DonationSchemeTypeEnum.yaml
schemas/20251121/linkml/modules/mappings/ISO20275_common.yaml
schemas/20251121/linkml/modules/mappings/ISO20275_mapping.yaml
schemas/20251121/linkml/modules/slots/changes_or_changed_ownership_from.yaml
schemas/20251121/linkml/modules/slots/is_or_was_published_at.yaml
schemas/20251121/linkml/modules/slots/objective.yaml
schemas/20251121/linkml/modules/slots/partnership_model.yaml
schemas/20251121/linkml/modules/slots/has_or_had_author.yaml
schemas/20251121/linkml/modules/slots/name_validity_period.yaml
schemas/20251121/linkml/modules/slots/contact_point.yaml
schemas/20251121/linkml/modules/slots/participant_count.yaml
schemas/20251121/linkml/modules/slots/is_or_was_involved_in.yaml
schemas/20251121/linkml/modules/slots/is_or_was_used_in.yaml
schemas/20251121/linkml/modules/slots/stores_or_stored.yaml
schemas/20251121/linkml/modules/slots/has_or_had_thumbnail.yaml
schemas/20251121/linkml/modules/slots/requires_or_required.yaml
schemas/20251121/linkml/modules/slots/has_or_had_arrangement.yaml
schemas/20251121/linkml/modules/slots/is_or_was_superseded_by.yaml
schemas/20251121/linkml/modules/slots/loan_timespan.yaml
schemas/20251121/linkml/modules/slots/secularization_status.yaml
schemas/20251121/linkml/modules/slots/applies_or_applied_to.yaml
schemas/20251121/linkml/modules/slots/is_or_was_based_on.yaml
schemas/20251121/linkml/modules/slots/creator_role.yaml
schemas/20251121/linkml/modules/slots/regulatory_authority.yaml
schemas/20251121/linkml/modules/slots/is_or_was_required.yaml
schemas/20251121/linkml/modules/slots/is_or_was_approximate.yaml
schemas/20251121/linkml/modules/slots/has_or_had_level.yaml
schemas/20251121/linkml/modules/slots/is_or_was_used_by.yaml
schemas/20251121/linkml/modules/slots/is_or_was_appended_with.yaml
schemas/20251121/linkml/modules/slots/scope_exclude.yaml
schemas/20251121/linkml/modules/slots/part_of_custodian_collection.yaml
schemas/20251121/linkml/modules/slots/has_or_had_status.yaml
schemas/20251121/linkml/modules/slots/is_or_was_responsible_for.yaml
schemas/20251121/linkml/modules/slots/policy_authority.yaml
schemas/20251121/linkml/modules/slots/uses_or_used.yaml
schemas/20251121/linkml/modules/slots/refers_or_referred_to.yaml
schemas/20251121/linkml/modules/slots/legal_entity_type.yaml
schemas/20251121/linkml/modules/slots/organizational_principle_uri.yaml
schemas/20251121/linkml/modules/slots/content_hash.yaml
schemas/20251121/linkml/modules/slots/regulated_by_scheme.yaml
schemas/20251121/linkml/modules/slots/record_timespan.yaml
schemas/20251121/linkml/modules/slots/has_or_had_expense.yaml
schemas/20251121/linkml/modules/slots/has_or_had_activity.yaml
schemas/20251121/linkml/modules/slots/is_or_was_transferred_to.yaml
schemas/20251121/linkml/modules/slots/justification.yaml
schemas/20251121/linkml/modules/slots/religious_tradition.yaml
schemas/20251121/linkml/modules/slots/has_or_had_frequency.yaml
schemas/20251121/linkml/modules/slots/is_or_was_located_in.yaml
schemas/20251121/linkml/modules/slots/mixed_governance_structure.yaml
schemas/20251121/linkml/modules/slots/requires_appointment.yaml
schemas/20251121/linkml/modules/slots/legal_form.yaml
schemas/20251121/linkml/modules/slots/has_or_had_revenue.yaml
schemas/20251121/linkml/modules/slots/refers_to_person.yaml
schemas/20251121/linkml/modules/slots/serves_finding_aid.yaml
schemas/20251121/linkml/modules/slots/has_or_had_significance.yaml
schemas/20251121/linkml/modules/slots/temporal_extent.yaml
schemas/20251121/linkml/modules/slots/organizational_principle.yaml
schemas/20251121/linkml/modules/slots/is_or_was_created_by.yaml
schemas/20251121/linkml/modules/slots/has_or_had_equipment_type.yaml
schemas/20251121/linkml/modules/slots/has_or_had_technological_infrastructure.yaml
schemas/20251121/linkml/modules/slots/is_or_was_part_of_total.yaml
schemas/20251121/linkml/modules/slots/oversight_jurisdiction.yaml
schemas/20251121/linkml/modules/slots/is_approximate.yaml
schemas/20251121/linkml/modules/slots/is_or_was_succeeded_by.yaml
schemas/20251121/linkml/modules/slots/has_or_had_sensitivity_level.yaml
schemas/20251121/linkml/modules/slots/provides_or_provided_provenance_to.yaml
schemas/20251121/linkml/modules/slots/creation_timespan.yaml
schemas/20251121/linkml/modules/slots/has_supervised_handling.yaml
schemas/20251121/linkml/modules/slots/poses_or_posed_condition.yaml
schemas/20251121/linkml/modules/slots/has_or_had_qualifier.yaml
schemas/20251121/linkml/modules/slots/reservation_required.yaml
schemas/20251121/linkml/modules/slots/archive/transfer_to_collection_date_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/time_of_destruction_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_requirement_status.yaml
schemas/20251121/linkml/modules/slots/archive/has_accession_number_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/cms_detected_archived_20260119.yaml
schemas/20251121/linkml/modules/slots/archive/has_articles_of_association.yaml
schemas/20251121/linkml/modules/slots/archive/has_acquisition_source_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/visitor_count_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/has_accession_date_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/documents_budget_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/confidence_score_archived_20260128.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_affiliation.yaml
schemas/20251121/linkml/modules/slots/archive/exhibition_timespan_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/has_person_observation.yaml
schemas/20251121/linkml/modules/slots/archive/volunteer_program_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/documented_by_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/feeds_portal_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/funding_program_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/successor_collection_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_portal_data_source.yaml
schemas/20251121/linkml/modules/slots/archive/has_acquisition_date_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/has_address_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/event_date_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/change_rationale_archived_20260128.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_access_right.yaml
schemas/20251121/linkml/modules/slots/archive/public_education.yaml
schemas/20251121/linkml/modules/slots/archive/type_scope_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/feature_name_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/funding_rate_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/has_timespan_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/event_timespan_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/storage_name_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/applies_or_applied_to_call_archived_20260117.yaml
schemas/20251121/linkml/modules/slots/archive/has_iso_3166_1_alpha_3_code_archived_20260116.yaml
schemas/20251121/linkml/modules/slots/archive/business_criticality_archived_20260117.yaml
schemas/20251121/linkml/modules/slots/archive/funding_scheme_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_curation_activity.yaml
schemas/20251121/linkml/modules/slots/archive/conflict_status_archived_20260122.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_place_of_birth.yaml
schemas/20251121/linkml/modules/slots/archive/collections_under_responsibility_archived_20260119.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_business_criticality.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_alternative_observed_name_archived_20260127.yaml
schemas/20251121/linkml/modules/slots/archive/has_iso_3166_1_alpha_2_code_archived_20260116.yaml
schemas/20251121/linkml/modules/slots/archive/event_type_archived_20260126.yaml
schemas/20251121/linkml/modules/slots/archive/has_appointment_required_flag_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_access_trigger_event.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_verification_status.yaml
schemas/20251121/linkml/modules/slots/archive/has_administrative_level_archived_20260127.yaml
schemas/20251121/linkml/modules/slots/archive/address_type_archived_20260114.yaml
schemas/20251121/linkml/modules/slots/archive/used_by_archived_20260115.yaml
schemas/20251121/linkml/modules/slots/archive/table_of_content_archived_20260116.yaml
schemas/20251121/linkml/modules/slots/archive/catalog_system_archived_20260124.yaml
schemas/20251121/linkml/modules/slots/archive/has_or_had_transmission_method.yaml
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