21c207c9da
- Migrated `archived_at` to `is_or_was_archived_at` in AuxiliaryDigitalPlatform, WebObservation, and other relevant classes to better reflect historical archival status. - Removed `bold_id` slot and replaced it with `has_or_had_identifier` linked to the new `BOLDIdentifier` class in BiologicalObject. - Introduced `Bookplate` and `Approver` classes to enhance provenance tracking and ownership documentation. - Updated `InformationCarrier` to replace `bookplate` with `includes_or_included` for better representation of ownership marks. - Added new slots `is_or_was_approved_by` and `is_or_was_archived_at` to capture historical approval and archival locations. - Archived old slot definitions for `archived_at` and `bold_id` to maintain schema integrity. - Enhanced LinkedIn profile extraction functionality by integrating Linkup API alongside Exa API.
108 lines
3.4 KiB
YAML
108 lines
3.4 KiB
YAML
id: https://nde.nl/ontology/hc/class/BOLDIdentifier
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name: bold_identifier_class
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title: BOLD Identifier Class
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description: >-
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Barcode of Life Data System (BOLD) identifier for biological specimens.
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Links heritage biological objects to their DNA barcode records in BOLD.
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prefixes:
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linkml: https://w3id.org/linkml/
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hc: https://nde.nl/ontology/hc/
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dcterms: http://purl.org/dc/terms/
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schema: http://schema.org/
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default_prefix: hc
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imports:
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- linkml:types
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- ../slots/id
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- ../slots/identifier_value
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- ../slots/identifier_url
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- ../slots/description
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- ../slots/specificity_annotation
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- ../slots/template_specificity
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- ./SpecificityAnnotation
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- ./TemplateSpecificityScores
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classes:
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BOLDIdentifier:
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class_uri: schema:PropertyValue
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description: >-
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A Barcode of Life Data System (BOLD) identifier linking a biological
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specimen to its DNA barcode record.
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**WHAT IS BOLD?**
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BOLD (Barcode of Life Data System) is an online workbench and database
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for DNA barcoding. It stores specimen data and DNA barcode sequences,
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enabling species identification through DNA.
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**USE CASES**:
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1. **Specimen Identification**: Link natural history specimens to DNA data
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2. **Species Verification**: Cross-reference morphological IDs with DNA barcodes
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3. **Research Provenance**: Document genetic sampling of collection objects
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**IDENTIFIER FORMAT**:
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BOLD identifiers follow the pattern: BOLD:XXXNNN
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- Process IDs: BOLD:AAA0001
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- Sample IDs: Institution-specific prefixes
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**EXTERNAL LINKS**:
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- BOLD Systems: https://boldsystems.org/
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- Record URL pattern: https://boldsystems.org/index.php/Public_RecordView?processid={id}
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exact_mappings:
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- schema:PropertyValue
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close_mappings:
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- dcterms:identifier
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slots:
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- id
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- identifier_value
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- identifier_url
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- description
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- specificity_annotation
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- template_specificity
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slot_usage:
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id:
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identifier: true
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required: true
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range: uriorcurie
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pattern: ^https://nde\.nl/ontology/hc/bold-id/[A-Z0-9-]+$
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examples:
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- value: https://nde.nl/ontology/hc/bold-id/NLNAT001-21
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description: Dutch natural history specimen BOLD ID
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identifier_value:
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description: The BOLD process ID or sample ID value.
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range: string
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required: true
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pattern: ^[A-Z]{2,5}[0-9]{3,7}(-[0-9]{2})?$
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examples:
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- value: NLNAT001-21
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description: Netherlands natural history specimen 2021
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- value: GBMIN12345-19
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description: UK specimen from 2019
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identifier_url:
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description: URL to the BOLD record page.
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range: uri
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examples:
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- value: https://boldsystems.org/index.php/Public_RecordView?processid=NLNAT001-21
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comments:
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- Used for DNA barcode identifiers in natural history collections
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- Links physical specimens to molecular data
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- Part of global biodiversity identification infrastructure
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examples:
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- value:
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id: https://nde.nl/ontology/hc/bold-id/NLNAT001-21
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identifier_value: NLNAT001-21
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identifier_url: https://boldsystems.org/index.php/Public_RecordView?processid=NLNAT001-21
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description: DNA barcode for Naturalis specimen
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description: BOLD identifier for a Dutch natural history specimen
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