209 lines
7.5 KiB
YAML
209 lines
7.5 KiB
YAML
id: https://nde.nl/ontology/hc/class/TaxonomicAuthority
|
|
name: TaxonomicAuthority
|
|
title: Taxonomic Authority Class
|
|
description: |
|
|
Structured representation of taxonomic name authorship.
|
|
|
|
Models the authorship information for scientific names following
|
|
nomenclatural codes (ICZN for animals, ICN for plants, ICNP for bacteria).
|
|
|
|
**MIGRATION**: Created to support `has_or_had_authority` slot per slot_fixes.yaml
|
|
(Rule 53/56, 2026-01-16). Replaces unstructured `taxonomic_authority` string values.
|
|
|
|
**Ontology Alignment**:
|
|
- class_uri: prov:Attribution (provenance attribution)
|
|
- Aligns with TCS (Taxon Concept Schema) authorship elements
|
|
- Maps to Darwin Core scientificNameAuthorship
|
|
|
|
**Key Properties**:
|
|
- has_or_had_label: The full authority string (e.g., "Linnaeus, 1758")
|
|
- has_or_had_author: Author name(s) as separate elements
|
|
- has_or_had_date: Publication year
|
|
- is_or_was_recombined: Whether parentheses indicate recombination
|
|
|
|
**Nomenclatural Codes**:
|
|
|
|
| Code | Domain | Example |
|
|
|------|--------|---------|
|
|
| ICZN | Animals | "Linnaeus, 1758" |
|
|
| ICN | Plants/Algae/Fungi | "L." (abbreviated) |
|
|
| ICNP | Prokaryotes | "(Migula 1900) Skerman et al. 1980" |
|
|
| ICVCN | Viruses | "ICTV 2020" |
|
|
|
|
**Example**:
|
|
```yaml
|
|
authority:
|
|
has_or_had_label: "Linnaeus, 1758"
|
|
has_or_had_author: ["Carl Linnaeus"]
|
|
has_or_had_date: 1758
|
|
is_or_was_recombined: false
|
|
nomenclatural_code: ICZN
|
|
```
|
|
prefixes:
|
|
linkml: https://w3id.org/linkml/
|
|
hc: https://nde.nl/ontology/hc/
|
|
prov: http://www.w3.org/ns/prov#
|
|
dwc: http://rs.tdwg.org/dwc/terms/
|
|
schema: http://schema.org/
|
|
skos: http://www.w3.org/2004/02/skos/core#
|
|
imports:
|
|
- linkml:types
|
|
- ../slots/has_or_had_identifier
|
|
- ../slots/has_or_had_label
|
|
- ../slots/has_or_had_description
|
|
- ../slots/has_or_had_date
|
|
default_prefix: hc
|
|
slots:
|
|
# Additional slots specific to TaxonomicAuthority
|
|
has_or_had_author:
|
|
slot_uri: schema:author
|
|
range: string
|
|
multivalued: true
|
|
description: |
|
|
Author name(s) for the taxonomic name.
|
|
May include multiple authors for co-authored descriptions.
|
|
|
|
is_or_was_recombined:
|
|
slot_uri: hc:isOrWasRecombined
|
|
range: boolean
|
|
description: |
|
|
Whether the name has been recombined from its original genus.
|
|
Indicated by parentheses around the authority in zoological nomenclature.
|
|
Example: "(Gray, 1821)" indicates original genus differs.
|
|
|
|
nomenclatural_code:
|
|
slot_uri: dwc:nomenclaturalCode
|
|
range: string
|
|
description: |
|
|
The nomenclatural code governing this name.
|
|
Values: ICZN, ICN, ICNP, ICVCN, etc.
|
|
examples:
|
|
- value: ICZN
|
|
description: International Code of Zoological Nomenclature
|
|
- value: ICN
|
|
description: International Code of Nomenclature for algae, fungi, and plants
|
|
|
|
basionym_authority:
|
|
slot_uri: hc:basionymAuthority
|
|
range: TaxonomicAuthority
|
|
description: |
|
|
Authority of the original name (basionym) if this is a recombination.
|
|
The parenthetical authority in "(Gray, 1821) Smith, 1900".
|
|
inlined: true
|
|
|
|
classes:
|
|
TaxonomicAuthority:
|
|
class_uri: prov:Attribution
|
|
description: |
|
|
Structured representation of taxonomic name authorship.
|
|
|
|
Provides detailed breakdown of author names, dates, and nomenclatural
|
|
status beyond a simple string representation.
|
|
exact_mappings:
|
|
- prov:Attribution
|
|
close_mappings:
|
|
- dwc:scientificNameAuthorship
|
|
- schema:CreativeWork # for the published description
|
|
slots:
|
|
- has_or_had_identifier
|
|
- has_or_had_label
|
|
- has_or_had_description
|
|
- has_or_had_date
|
|
- has_or_had_author
|
|
- is_or_was_recombined
|
|
- nomenclatural_code
|
|
- basionym_authority
|
|
slot_usage:
|
|
has_or_had_identifier:
|
|
description: Reference to authority in taxonomic databases (e.g., IPNI, ZooBank).
|
|
examples:
|
|
- value: "urn:lsid:zoobank.org:act:12345678-1234-1234-1234-123456789012"
|
|
description: ZooBank LSID for nomenclatural act
|
|
has_or_had_label:
|
|
required: true
|
|
description: |
|
|
The full authority string as conventionally formatted.
|
|
This is the human-readable form of the authority.
|
|
examples:
|
|
- value: "Linnaeus, 1758"
|
|
description: Standard zoological authority format
|
|
- value: "(Gray, 1821)"
|
|
description: Parentheses indicate recombination
|
|
- value: "L."
|
|
description: Abbreviated botanical authority
|
|
- value: "(Migula 1900) Skerman et al. 1980"
|
|
description: Complex bacterial recombination
|
|
has_or_had_author:
|
|
multivalued: true
|
|
description: Author name(s) parsed from the authority string.
|
|
examples:
|
|
- value: ["Carl Linnaeus"]
|
|
- value: ["Asa Gray"]
|
|
- value: ["Skerman", "McGowan", "Sneath"]
|
|
description: Multiple authors
|
|
has_or_had_date:
|
|
description: |
|
|
Year of original publication/description.
|
|
May be a range for imprecisely dated works.
|
|
examples:
|
|
- value: 1758
|
|
description: Publication year of Systema Naturae 10th edition
|
|
has_or_had_description:
|
|
description: Notes on the authority or publication context.
|
|
examples:
|
|
- value: "Original description in Systema Naturae, 10th edition"
|
|
is_or_was_recombined:
|
|
examples:
|
|
- value: false
|
|
description: Name in original genus
|
|
- value: true
|
|
description: Parenthetical authority indicates recombination
|
|
nomenclatural_code:
|
|
examples:
|
|
- value: ICZN
|
|
- value: ICN
|
|
comments:
|
|
- TaxonomicAuthority provides structured representation of authorship
|
|
- The has_or_had_label slot holds the conventional formatted string
|
|
- Use is_or_was_recombined to indicate parenthetical authorities
|
|
- Link to nomenclatural databases via has_or_had_identifier
|
|
see_also:
|
|
- https://www.iczn.org/
|
|
- https://www.iapt-taxon.org/nomen/main.php
|
|
- https://dwc.tdwg.org/terms/#dwc:scientificNameAuthorship
|
|
examples:
|
|
- value:
|
|
has_or_had_label: "Linnaeus, 1758"
|
|
has_or_had_author: ["Carl Linnaeus"]
|
|
has_or_had_date: 1758
|
|
is_or_was_recombined: false
|
|
nomenclatural_code: ICZN
|
|
has_or_had_description: "Original description of Homo sapiens in Systema Naturae, 10th edition"
|
|
description: Standard zoological authority (Linnaeus)
|
|
- value:
|
|
has_or_had_label: "(Gray, 1821)"
|
|
has_or_had_author: ["John Edward Gray"]
|
|
has_or_had_date: 1821
|
|
is_or_was_recombined: true
|
|
nomenclatural_code: ICZN
|
|
description: Recombined authority (parenthetical)
|
|
- value:
|
|
has_or_had_label: "L."
|
|
has_or_had_author: ["Carl Linnaeus"]
|
|
has_or_had_date: 1753
|
|
is_or_was_recombined: false
|
|
nomenclatural_code: ICN
|
|
has_or_had_description: "Abbreviated botanical authority per ICN conventions"
|
|
description: Abbreviated botanical authority
|
|
- value:
|
|
has_or_had_label: "(Migula 1900) Skerman et al. 1980"
|
|
has_or_had_author: ["Skerman", "McGowan", "Sneath"]
|
|
has_or_had_date: 1980
|
|
is_or_was_recombined: true
|
|
nomenclatural_code: ICNP
|
|
basionym_authority:
|
|
has_or_had_label: "Migula 1900"
|
|
has_or_had_author: ["Walter Migula"]
|
|
has_or_had_date: 1900
|
|
is_or_was_recombined: false
|
|
description: Complex bacterial recombination with basionym
|