glam/schemas/20251121/linkml/modules/classes/Animal.yaml
kempersc fc405445c6 Refactor and update schema definitions
- Removed obsolete slots: `has_or_had_custodian_observation`, `provider`, and `specificity_annotation`.
- Updated `has_or_had_score` slot to use `SpecificityScore` class and modified its description and examples.
- Added new slots: `end_seconds`, `end_time`, `has_archive_path`, `has_or_had_custodian_name`, `protocol_name`, and `protocol_version`.
- Introduced a script `check_annotation_types.py` to validate the presence and structure of `custodian_types` in YAML files.
- Added a script `update_specificity.py` to automate updates related to `SpecificityAnnotation` to `SpecificityScore`.
2026-02-01 19:55:38 +01:00

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YAML

id: https://nde.nl/ontology/hc/class/Animal
name: Animal
title: Animal Class
prefixes:
linkml: https://w3id.org/linkml/
hc: https://nde.nl/ontology/hc/
schema: http://schema.org/
wd: http://www.wikidata.org/entity/
dcterms: http://purl.org/dc/terms/
prov: http://www.w3.org/ns/prov#
crm: http://www.cidoc-crm.org/cidoc-crm/
skos: http://www.w3.org/2004/02/skos/core#
rdfs: http://www.w3.org/2000/01/rdf-schema#
org: http://www.w3.org/ns/org#
xsd: http://www.w3.org/2001/XMLSchema#
default_prefix: hc
imports:
- linkml:types
- ../slots/has_or_had_description
- ../slots/has_or_had_label
- ../slots/is_or_was_categorized_as
classes:
Animal:
class_uri: schema:Animal
description: 'An animal.
**Ontological Alignment**:
- `schema:Animal`: Generic animal class.
'
slots:
- has_or_had_label
- has_or_had_description
- is_or_was_categorized_as
slot_usage:
is_or_was_categorized_as:
range: Species
annotations:
specificity_score: 0.1
specificity_rationale: Generic utility class/slot created during migration
custodian_types: "['*']"