fc405445c6
- Removed obsolete slots: `has_or_had_custodian_observation`, `provider`, and `specificity_annotation`. - Updated `has_or_had_score` slot to use `SpecificityScore` class and modified its description and examples. - Added new slots: `end_seconds`, `end_time`, `has_archive_path`, `has_or_had_custodian_name`, `protocol_name`, and `protocol_version`. - Introduced a script `check_annotation_types.py` to validate the presence and structure of `custodian_types` in YAML files. - Added a script `update_specificity.py` to automate updates related to `SpecificityAnnotation` to `SpecificityScore`.
72 lines
2.9 KiB
YAML
72 lines
2.9 KiB
YAML
id: https://nde.nl/ontology/hc/class/IdentificationEvent
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name: identification_event
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title: Identification Event
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prefixes:
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linkml: https://w3id.org/linkml/
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hc: https://nde.nl/ontology/hc/
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dwc: http://rs.tdwg.org/dwc/terms/
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prov: http://www.w3.org/ns/prov#
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schema: http://schema.org/
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dcterms: http://purl.org/dc/terms/
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crm: http://www.cidoc-crm.org/cidoc-crm/
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skos: http://www.w3.org/2004/02/skos/core#
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rdfs: http://www.w3.org/2000/01/rdf-schema#
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org: http://www.w3.org/ns/org#
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xsd: http://www.w3.org/2001/XMLSchema#
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default_prefix: hc
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imports:
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- linkml:types
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- ../slots/has_or_had_description
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- ../slots/has_or_had_score
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- ../slots/temporal_extent
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classes:
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IdentificationEvent:
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class_uri: hc:IdentificationEvent
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description: "Event representing the taxonomic or specimen identification.\n\n\
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**DEFINITION**:\nIdentificationEvent models when and by whom a biological specimen,\n\
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object, or artifact was identified or classified.\n\n**ONTOLOGY ALIGNMENT**:\n\
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- **Primary** (`class_uri`): `hc:IdentificationEvent` - Heritage Custodian class\n\
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- **Close**: `dwc:Identification` - Darwin Core identification\n- **Close**:\
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\ `prov:Activity` - PROV-O activity\n\n**USAGE**:\nReplaces simple `date_identified`\
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\ dates with structured event data:\n- When the identification was made (temporal_extent)\n\
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- Who made the identification (identified_by)\n- Methodology used\n- Confidence\
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\ level\n- References consulted\n\n**Example**:\n```yaml\nis_or_was_identified_through:\n\
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\ temporal_extent:\n begin_of_the_begin: \"2023-05-15\"\n identified_by:\n\
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\ - agent_name: \"Dr. Jane Smith\"\n agent_role: \"taxonomist\"\n identification_method:\
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\ \"Morphological analysis\"\n identification_confidence: \"high\"\n```\n"
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close_mappings:
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- dwc:Identification
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- prov:Activity
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slots:
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- temporal_extent
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- has_or_had_description
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- has_or_had_score
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slot_usage:
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temporal_extent:
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range: TimeSpan
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inlined: true
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examples:
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- value:
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begin_of_the_begin: '2023-05-15'
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- value:
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- agent_name: Dr. J. Smith
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- value: Morphological analysis
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- value: DNA barcoding
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- value: Comparison with type specimen
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has_or_had_score:
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range: ConfidenceScore
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inlined: true
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examples:
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- value:
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has_or_had_score: 0.9
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has_or_had_description: High confidence
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- value:
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has_or_had_score: 0.5
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has_or_had_description: Tentative
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- value: Flora of North America, Vol. 3
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annotations:
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custodian_types: '["M", "R", "B"]'
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custodian_types_rationale: Identification events primarily for natural history
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museums, research centers, botanical gardens.
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specificity_score: 0.75
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specificity_rationale: Specific to biological/natural history collection contexts.
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