fc405445c6
- Removed obsolete slots: `has_or_had_custodian_observation`, `provider`, and `specificity_annotation`. - Updated `has_or_had_score` slot to use `SpecificityScore` class and modified its description and examples. - Added new slots: `end_seconds`, `end_time`, `has_archive_path`, `has_or_had_custodian_name`, `protocol_name`, and `protocol_version`. - Introduced a script `check_annotation_types.py` to validate the presence and structure of `custodian_types` in YAML files. - Added a script `update_specificity.py` to automate updates related to `SpecificityAnnotation` to `SpecificityScore`.
67 lines
2.5 KiB
YAML
67 lines
2.5 KiB
YAML
id: https://nde.nl/ontology/hc/classes/ProvenanceBlock
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name: ProvenanceBlock
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title: ProvenanceBlock
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prefixes:
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linkml: https://w3id.org/linkml/
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hc: https://nde.nl/ontology/hc/
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schema: http://schema.org/
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prov: http://www.w3.org/ns/prov#
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xsd: http://www.w3.org/2001/XMLSchema#
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pav: http://purl.org/pav/
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imports:
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- linkml:types
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- ../enums/DataTierEnum
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- ../slots/is_or_was_generated_by
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- ../slots/note
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- ../slots/source_type
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- ../slots/source_url
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- ../slots/standards_compliance
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default_range: string
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classes:
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ProvenanceBlock:
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description: "Complete provenance tracking for the entry, supporting both nested\
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\ and flat formats. Contains information about data sources, extraction methods,\
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\ timestamps, confidence scores, and verification status. This is the primary\
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\ class for documenting the lineage and quality of data in custodian records.\n\
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Ontology mapping rationale: - class_uri is prov:Bundle because this represents\
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\ a named set of provenance\n descriptions bundled together - it's provenance\
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\ ABOUT provenance/data\n- close_mappings includes pav:Provenance conceptually\
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\ as PAV's approach to\n tracking authoring and versioning provenance\n- related_mappings\
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\ includes prov:Entity (the bundle is itself an entity) and\n prov:Activity\
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\ (extraction/enrichment are activities with timestamps)"
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class_uri: prov:Bundle
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close_mappings:
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- pav:Provenance
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related_mappings:
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- prov:Entity
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- prov:Activity
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slots:
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- is_or_was_generated_by
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- note
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- source_url
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- source_type
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- standards_compliance
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slot_usage:
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is_or_was_generated_by:
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range: GenerationEvent
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required: false
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inlined: true
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description: 'Generation event containing confidence score for the provenance
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block. MIGRATED 2026-01-19: Replaces confidence_score slot with structured
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pattern.'
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examples:
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- value:
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has_or_had_score:
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has_or_had_score: 0.95
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has_or_had_method: automated_extraction
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- value:
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has_or_had_score:
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has_or_had_score: 0.65
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has_or_had_method: manual_review
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comments:
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- 'MIGRATED 2026-01-19: confidence_score → is_or_was_generated_by + GenerationEvent
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+ ConfidenceScore (Rule 53)'
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annotations:
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specificity_score: 0.1
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specificity_rationale: Generic utility class/slot created during migration
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custodian_types: '[''*'']'
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