glam/GEOGRAPHIC_RESTRICTION_SESSION_COMPLETE.md
kempersc 67657c39b6 feat: Complete Country Class Implementation and Hypernyms Removal
- Created the Country class with ISO 3166-1 alpha-2 and alpha-3 codes, ensuring minimal design without additional metadata.
- Integrated the Country class into CustodianPlace and LegalForm schemas to support country-specific feature types and legal forms.
- Removed duplicate keys in FeatureTypeEnum.yaml, resulting in 294 unique feature types.
- Eliminated "Hypernyms:" text from FeatureTypeEnum descriptions, verifying that semantic relationships are now conveyed through ontology mappings.
- Created example instance file demonstrating integration of Country with CustodianPlace and LegalForm.
- Updated documentation to reflect the completion of the Country class implementation and hypernyms removal.
2025-11-23 13:09:38 +01:00

16 KiB

Geographic Restriction Implementation - Session Complete

Date: 2025-11-22
Status: Phase 1 Complete - Geographic infrastructure created, Wikidata geography extracted


🎯 What We Accomplished

1. Created Geographic Infrastructure Classes

Created three new LinkML classes for geographic modeling:

Country.yaml (Already existed)

  • Location: schemas/20251121/linkml/modules/classes/Country.yaml
  • Purpose: ISO 3166-1 alpha-2 and alpha-3 country codes
  • Status: Complete, already linked to CustodianPlace.country and LegalForm.country_code
  • Examples: NL/NLD (Netherlands), US/USA (United States), JP/JPN (Japan)

Subregion.yaml 🆕 (Created today)

  • Location: schemas/20251121/linkml/modules/classes/Subregion.yaml
  • Purpose: ISO 3166-2 subdivision codes (states, provinces, regions)
  • Format: {country_alpha2}-{subdivision_code} (e.g., "US-PA", "ID-BA")
  • Slots:
    • iso_3166_2_code (identifier, pattern ^[A-Z]{2}-[A-Z0-9]{1,3}$)
    • country (link to parent Country)
    • subdivision_name (optional human-readable name)
  • Examples: US-PA (Pennsylvania), ID-BA (Bali), DE-BY (Bavaria), NL-LI (Limburg)

Settlement.yaml 🆕 (Created today)

  • Location: schemas/20251121/linkml/modules/classes/Settlement.yaml
  • Purpose: GeoNames-based city/town identifiers
  • Slots:
    • geonames_id (numeric identifier, e.g., 5206379 for Pittsburgh)
    • settlement_name (human-readable name)
    • country (link to Country)
    • subregion (optional link to Subregion)
    • latitude, longitude (WGS84 coordinates)
  • Examples:
    • Amsterdam: GeoNames 2759794
    • Pittsburgh: GeoNames 5206379
    • Rio de Janeiro: GeoNames 3451190

2. Extracted Wikidata Geographic Metadata

Script: scripts/extract_wikidata_geography.py 🆕

What it does:

  1. Parses data/wikidata/GLAMORCUBEPSXHFN/hyponyms_curated.yaml (2,455 entries)
  2. Extracts country:, subregion:, settlement: fields from each hypernym
  3. Maps human-readable names to ISO codes:
    • Country names → ISO 3166-1 alpha-2 (e.g., "Netherlands" → "NL")
    • Subregion names → ISO 3166-2 (e.g., "Pennsylvania" → "US-PA")
    • Settlement names → GeoNames IDs (e.g., "Pittsburgh" → 5206379)
  4. Generates geographic annotations for FeatureTypeEnum

Results:

  • 1,217 entities with geographic metadata
  • 119 countries mapped (includes historical entities: Byzantine Empire, Soviet Union, Czechoslovakia)
  • 119 subregions mapped (US states, German Länder, Canadian provinces, etc.)
  • 8 settlements mapped (Amsterdam, Pittsburgh, Rio de Janeiro, etc.)
  • 0 unmapped countries (100% coverage!)
  • 0 unmapped subregions (100% coverage!)

Mapping Dictionaries (in script):

COUNTRY_NAME_TO_ISO = {
    "Netherlands": "NL",
    "Japan": "JP",
    "Peru": "PE",
    "United States": "US",
    "Indonesia": "ID",
    # ... 133 total mappings
}

SUBREGION_NAME_TO_ISO = {
    "Pennsylvania": "US-PA",
    "Bali": "ID-BA",
    "Bavaria": "DE-BY",
    "Limburg": "NL-LI",
    # ... 120 total mappings
}

SETTLEMENT_NAME_TO_GEONAMES = {
    "Amsterdam": 2759794,
    "Pittsburgh": 5206379,
    "Rio de Janeiro": 3451190,
    # ... 8 total mappings
}

Output Files:

  • data/extracted/wikidata_geography_mapping.yaml - Intermediate mapping data (Q-numbers → ISO codes)
  • data/extracted/feature_type_geographic_annotations.yaml - Annotations for FeatureTypeEnum integration

3. Cross-Referenced with FeatureTypeEnum

Analysis Results:

  • FeatureTypeEnum has 294 Q-numbers total
  • Annotations file has 1,217 Q-numbers from Wikidata
  • 72 matched Q-numbers (have both enum entry AND geographic restriction)
  • 222 Q-numbers in enum but no geographic data (globally applicable feature types)
  • 1,145 Q-numbers have geography but no enum entry (not heritage feature types in our taxonomy)

Feature Types with Geographic Restrictions (72 total)

Organized by country:

Country Count Examples
Japan 🇯🇵 33 Shinto shrines (BEKKAKU_KANPEISHA, CHOKUSAISHA, INARI_SHRINE, etc.)
USA 🇺🇸 13 CITY_OF_PITTSBURGH_HISTORIC_DESIGNATION, FLORIDA_UNDERWATER_ARCHAEOLOGICAL_PRESERVE, etc.
Norway 🇳🇴 4 BLUE_PLAQUES_IN_NORWAY, MEDIEVAL_CHURCH_IN_NORWAY, etc.
Netherlands 🇳🇱 3 BUITENPLAATS, HERITAGE_DISTRICT_IN_THE_NETHERLANDS, PROTECTED_TOWNS_AND_VILLAGES_IN_LIMBURG
Czech Republic 🇨🇿 3 SIGNIFICANT_LANDSCAPE_ELEMENT, VILLAGE_CONSERVATION_ZONE, etc.
Other 16 Austria (1), China (2), Spain (2), France (1), Germany (1), Indonesia (1), Peru (1), etc.

Detailed Breakdown (see session notes for full list with Q-numbers)

Examples of Country-Specific Feature Types:

# Netherlands (NL) - 3 types
BUITENPLAATS:  # Q2927789
  dcterms:spatial: NL
  wikidata_country: Netherlands
  
# Indonesia / Bali (ID-BA) - 1 type
SACRED_SHRINE_BALI:  # Q136396228
  dcterms:spatial: ID
  iso_3166_2: ID-BA
  wikidata_subregion: Bali
  
# USA / Pennsylvania (US-PA) - 1 type
CITY_OF_PITTSBURGH_HISTORIC_DESIGNATION:  # Q64960148
  dcterms:spatial: US
  # No subregion in Wikidata, but logically US-PA
  
# Peru (PE) - 1 type
CULTURAL_HERITAGE_OF_PERU:  # Q16617058
  dcterms:spatial: PE
  wikidata_country: Peru

4. Created Annotation Integration Script 🆕

Script: scripts/add_geographic_annotations_to_enum.py

What it does:

  1. Loads data/extracted/feature_type_geographic_annotations.yaml
  2. Loads schemas/20251121/linkml/modules/enums/FeatureTypeEnum.yaml
  3. Matches Q-numbers between annotation file and enum
  4. Adds annotations field to matching permissible values:
    BUITENPLAATS:
      meaning: wd:Q2927789
      description: Dutch country estate
      annotations:
        dcterms:spatial: NL
        wikidata_country: Netherlands
    
  5. Writes updated FeatureTypeEnum.yaml

Geographic Annotations Added:

  • dcterms:spatial: ISO 3166-1 alpha-2 country code (e.g., "NL")
  • iso_3166_2: ISO 3166-2 subdivision code (e.g., "US-PA") [if available]
  • geonames_id: GeoNames ID for settlements (e.g., 5206379) [if available]
  • wikidata_country: Human-readable country name from Wikidata
  • wikidata_subregion: Human-readable subregion name [if available]
  • wikidata_settlement: Human-readable settlement name [if available]

Status: ⚠️ Ready to run (waiting for FeatureTypeEnum duplicate key errors to be resolved)


📊 Summary Statistics

Geographic Coverage

Category Count Status
Countries 119 100% mapped
Subregions 119 100% mapped
Settlements 8 100% mapped
Entities with geography 1,217 Extracted
Feature types restricted 72 Identified

Top Countries by Feature Type Restrictions

  1. Japan: 33 feature types (45.8%) - Shinto shrine classifications
  2. USA: 13 feature types (18.1%) - National monuments, state historic sites
  3. Norway: 4 feature types (5.6%) - Medieval churches, blue plaques
  4. Netherlands: 3 feature types (4.2%) - Buitenplaats, heritage districts
  5. Czech Republic: 3 feature types (4.2%) - Landscape elements, village zones

🔍 Key Design Decisions

Decision 1: Minimal Country Class Design

Rationale: ISO 3166 codes are authoritative, stable, language-neutral identifiers. Country names, languages, capitals, and other metadata should be resolved via external services (GeoNames, UN M49) to keep the ontology focused on heritage relationships, not geopolitical data.

Impact: Country class only contains alpha_2 and alpha_3 slots. No names, no languages, no capitals.

Decision 2: Use ISO 3166-2 for Subregions

Rationale: ISO 3166-2 provides standardized subdivision codes used globally. Format {country}-{subdivision} (e.g., "US-PA") is unambiguous and widely adopted in government registries, GeoNames, etc.

Impact: Handles regional restrictions (e.g., "Bali-specific shrines" = ID-BA, "Pennsylvania designations" = US-PA)

Decision 3: GeoNames for Settlements

Rationale: GeoNames provides stable numeric identifiers for settlements worldwide, resolving ambiguity from duplicate city names (e.g., 41 "Springfield"s in USA).

Impact: Settlement class uses geonames_id as primary identifier, with settlement_name as human-readable fallback.

Decision 4: Use dcterms:spatial for Country Restrictions

Rationale: dcterms:spatial (Dublin Core) is a W3C standard property explicitly covering "jurisdiction under which the resource is relevant." Already used in DBpedia for geographic restrictions.

Impact: FeatureTypeEnum permissible values get dcterms:spatial annotation for validation.

Decision 5: Handle Historical Entities

Rationale: Some Wikidata entries reference historical countries (Soviet Union, Czechoslovakia, Byzantine Empire, Japanese Empire). These need special ISO codes.

Implementation:

COUNTRY_NAME_TO_ISO = {
    "Soviet Union": "HIST-SU",
    "Czechoslovakia": "HIST-CS",
    "Byzantine Empire": "HIST-BYZ",
    "Japanese Empire": "HIST-JP",
}

🚀 Next Steps

Phase 2: Schema Integration (30-45 min)

  1. Fix FeatureTypeEnum duplicate keys (if needed)

    • Current: YAML loads successfully despite warnings
    • Action: Verify PyYAML handles duplicate annotations correctly
  2. Run annotation integration script

    python3 scripts/add_geographic_annotations_to_enum.py
    
    • Adds dcterms:spatial, iso_3166_2, geonames_id to 72 enum entries
    • Preserves existing ontology mappings and descriptions
  3. Add geographic slots to CustodianLegalStatus

    • Current: CustodianLegalStatus has indirect country via LegalForm.country_code
    • Proposed: Add direct country, subregion, settlement slots
    • Rationale: Legal entities are jurisdiction-specific (e.g., Dutch stichting can only exist in NL)
  4. Import Subregion and Settlement classes into main schema

    • Edit schemas/20251121/linkml/01_custodian_name.yaml
    • Add imports:
      imports:
        - modules/classes/Country
        - modules/classes/Subregion  # NEW
        - modules/classes/Settlement  # NEW
      
  5. Update CustodianPlace to support subregion/settlement

    • Add optional slots:
      CustodianPlace:
        slots:
          - country  # Already exists
          - subregion  # NEW - optional
          - settlement  # NEW - optional
      

Phase 3: Validation Implementation (30-45 min)

  1. Create validation script: scripts/validate_geographic_restrictions.py

    def validate_country_restrictions(custodian_place, feature_type_enum):
        """
        Validate that CustodianPlace.country matches FeatureTypeEnum.dcterms:spatial
        """
        # Extract dcterms:spatial from enum annotations
        # Cross-check with CustodianPlace.country.alpha_2
        # Raise ValidationError if mismatch
    
  2. Add test cases

    • Valid: BUITENPLAATS in Netherlands (NL)
    • Invalid: BUITENPLAATS in Germany (DE)
    • Valid: CITY_OF_PITTSBURGH_HISTORIC_DESIGNATION in USA (US)
    • Invalid: CITY_OF_PITTSBURGH_HISTORIC_DESIGNATION in Canada (CA)
    • Valid: SACRED_SHRINE_BALI in Indonesia (ID) with subregion ID-BA
    • Invalid: SACRED_SHRINE_BALI in Japan (JP)

Phase 4: Documentation & RDF Generation (15-20 min)

  1. Update Mermaid diagrams

    • schemas/20251121/uml/mermaid/CustodianPlace.md - Add Country, Subregion, Settlement relationships
    • schemas/20251121/uml/mermaid/CustodianLegalStatus.md - Add Country relationship (if direct link added)
  2. Regenerate RDF/OWL schema

    TIMESTAMP=$(date +%Y%m%d_%H%M%S)
    gen-owl -f ttl schemas/20251121/linkml/01_custodian_name.yaml > \
      schemas/20251121/rdf/01_custodian_name_${TIMESTAMP}.owl.ttl
    
  3. Document validation workflow

    • Create docs/GEOGRAPHIC_RESTRICTIONS_VALIDATION.md
    • Explain dcterms:spatial usage
    • Provide examples of valid/invalid combinations

📁 Files Created/Modified

New Files 🆕

File Purpose Status
schemas/20251121/linkml/modules/classes/Subregion.yaml ISO 3166-2 subdivision class Created
schemas/20251121/linkml/modules/classes/Settlement.yaml GeoNames-based settlement class Created
scripts/extract_wikidata_geography.py Extract geographic metadata from Wikidata Created
scripts/add_geographic_annotations_to_enum.py Add annotations to FeatureTypeEnum Created
data/extracted/wikidata_geography_mapping.yaml Intermediate mapping data Generated
data/extracted/feature_type_geographic_annotations.yaml FeatureTypeEnum annotations Generated
GEOGRAPHIC_RESTRICTION_SESSION_COMPLETE.md This document Created

Existing Files (Not yet modified)

File Planned Modification Status
schemas/20251121/linkml/01_custodian_name.yaml Add Subregion/Settlement imports Pending
schemas/20251121/linkml/modules/classes/CustodianPlace.yaml Add subregion/settlement slots Pending
schemas/20251121/linkml/modules/classes/CustodianLegalStatus.yaml Add country/subregion slots Pending
schemas/20251121/linkml/modules/enums/FeatureTypeEnum.yaml Add dcterms:spatial annotations Pending

🤝 Handoff Notes for Next Agent

Critical Context

  1. Geographic metadata extraction is 100% complete

    • All 1,217 Wikidata entities processed
    • 119 countries + 119 subregions + 8 settlements mapped
    • 72 feature types identified with geographic restrictions
  2. Scripts are ready to run

    • extract_wikidata_geography.py - Successfully executed
    • add_geographic_annotations_to_enum.py - Ready to run (waiting on enum fix)
  3. FeatureTypeEnum has duplicate key warnings

    • PyYAML loads successfully (keeps last value for duplicates)
    • Duplicate keys are in annotations field (multiple ontology mapping keys)
    • Does NOT block functionality - proceed with annotation integration
  4. Design decisions documented

    • ISO 3166-1 for countries (alpha-2/alpha-3)
    • ISO 3166-2 for subregions ({country}-{subdivision})
    • GeoNames for settlements (numeric IDs)
    • dcterms:spatial for geographic restrictions

Immediate Next Step

Run the annotation integration script:

cd /Users/kempersc/apps/glam
python3 scripts/add_geographic_annotations_to_enum.py

This will add dcterms:spatial annotations to 72 permissible values in FeatureTypeEnum.yaml.

Questions for User

  1. Should CustodianLegalStatus get direct geographic slots?

    • Currently has indirect country via LegalForm.country_code
    • Proposal: Add country, subregion slots for jurisdiction-specific legal forms
    • Example: Dutch "stichting" can only exist in Netherlands (NL)
  2. Should CustodianPlace support subregion and settlement?

    • Currently only has country slot
    • Proposal: Add optional subregion (ISO 3166-2) and settlement (GeoNames) slots
    • Enables validation like "Pittsburgh designation requires US-PA subregion"
  3. Should we validate at country-only or subregion level?

    • Level 1: Country-only (simple, covers 90% of cases)
    • Level 2: Country + Subregion (handles regional restrictions like Bali, Pennsylvania)
    • Recommendation: Start with Level 2, add Level 3 (settlement) later if needed

  • COUNTRY_RESTRICTION_IMPLEMENTATION.md - Original implementation plan (4,500+ words)
  • COUNTRY_RESTRICTION_QUICKSTART.md - TL;DR 3-step guide (1,200+ words)
  • schemas/20251121/linkml/modules/classes/Country.yaml - Country class (already exists)
  • schemas/20251121/linkml/modules/classes/Subregion.yaml - Subregion class (created today)
  • schemas/20251121/linkml/modules/classes/Settlement.yaml - Settlement class (created today)

Session Date: 2025-11-22
Agent: OpenCODE AI Assistant
Status: Phase 1 Complete - Geographic Infrastructure Created
Next: Phase 2 - Schema Integration (run annotation script)